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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 10:06:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Camellia sinensis mRNA, clone: LR11C01, 5' end sequence, expressed in lateral roots.
FS944108.1:195-215
TTCGCAAGGTCTACGGCATTCTCGCCGCTC195AACTCGTCCTCACCACCGTCGTCTCCTCCATCACCGTCCTCTATCCCCCCG
Camellia sinensis mRNA, clone: LR16H07, 5' end sequence, expressed in lateral roots.
FS944565.1:101-121
TTCGCAAGGTCTACGGCATTCTCGCCGCTC101AACTCGTCCTCACCACCGTCGTCTCCTCCATCACCGTCCTCTATCCCCCCG
EST0804 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07092008-CHAG_04_92.M13+_D12.ab1, mRNA sequence.
GE650477.1:223-243
TTCGCAAGGTCTACGGCATTCTCGCCGCTC223AACTCGTCCTCACCACCGTCGTCTCCTCCATCACCGTCCTCTATCCCCCCG
EST1110 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_09_20.M13+_D03.ab1, mRNA sequence.
GE650783.1:235-255
TTCGCAAGGTCTACGGCATTCTCGCCGCTC235AACTCGTCCTCACCACCGTCGTCTCCTCCATCACCGTCCTCTATCCCCCCA
EST1768 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_17_91.M13+_C12.ab1, mRNA sequence.
GE651441.1:221-241
TTCGCAAGGTCTACGGCATTCTCGCCGCTC221AACTCGTCCTCACCACCGTCGTCTCCTCCATCACCGTCCTCTATCCCCCCG
EST3266 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 08012802-OUYI_CHAG_39_56.M13+_H07, mRNA sequence.
GE652939.1:211-231
TTCGCAAGGTCTACGGCATTCTCGCCGCTC211AACTCGTCCTCACCACCGTCGTCTCCTCCATCACCGTCCTCTATCCCCCCG
Tea212_2006-02-10_1/Tea212_A01_008_1 Camellia sinensis (tea) cultivar TRI2043 EST library Camellia sinensis cDNA, mRNA sequence.
JK476090.1:43-63
TTCGCAAGGTCTACGGCATTCTCGCCGCTC43AACTCGTCCTCACCACCGTCGTCTCCTCCATCACCGTCCTCTATCCCCCCG
Camellia_272 Dixie Knight seed cDNA library Camellia japonica cDNA, mRNA sequence.
JK711318.1:167-187
TTCGCAAGGTCTACGGCATTCTCGCCGCTC167AACTCGTCCTCACCACCGTCGTCTCCTCCATCACCGTCCTCTACCCCCCCG
TSA: Camellia sinensis tea_c6707 mRNA sequence.
KA286107.1:231-251
TTCGCAAGGTCTACGGCATTCTCGCCGCTC231AACTCGTCCTCACCACCGTCGTCTCCTCCATCACCGTCCTCTACCCCCCCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGACGGTGGTGAGGACGAGTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGACGGTGGTGAGGACGAGTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.107 | 0.098 | search_plus_done; http://172.18.8.135:50400/match?q=CGACGGTGGTGAGGACGAGTT&k=0&no_gap=0&offset=0&limit=50
0.701 | 0.594 | search_minus_done; http://172.18.8.135:50400/match?q=AACTCGTCCTCACCACCGTCG&k=0&no_gap=0&offset=0&limit=50
0.707 | 0.006 | cgi_end;

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