GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 19:35:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:6849692-6849711
TGGGTTCAATCTGCCTGGCTTTCATAGCCT6849692CGAGACCTACCTTCATCTTGTGGATGGGTTTTTGAGTACAGAAACTACTT
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:6868254-6868273
CGGGTTCAATCTGACTGGGTTTCATAGCCT6868254CGAGACCTACCTTCATCTTGTGGATGGGTTTTTGAGTACAGAAACTACTT
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:6556250-6556269
TGAGTTCAATCTGCCTGGCTTTCATAGCCT6556250CGAGACCTACCTTCATCTTGTGGATGGGTTTTTGAGTACAGAAACTACTT
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:6574786-6574805
CGGGTTCAATCTGACTGGGTTTCATAGCCT6574786CGAGACCTACCTTCATCTTGTGGATGGGTTTTTGAGTACAGAAACTACTT
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:5350155-5350174
CGGGTTCAATCTGCCTGGTTTTCATAGCCT5350155CGAGACCTACCTTCATCTTGTGGATGGGTTTTTGAGTACAGAAACTACTT
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:39952383-39952402
AAGTAGTTTCTGTACTCAAAAACCCATCCA39952383CAAGATGAAGGTAGGTCTCGAGGCTATGAAACCCTGTCAGATTGAACCCG
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:39970420-39970439
AAGTAGTTTCTGTACTCAAAAACCCATCCA39970420CAAGATGAAGGTAGGTCTCGAGGCTATGAAAGCCAGGCAGATTGAACCCA
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:40250235-40250254
AAGTAGTTTCTGTACTCAAAAACCCATCCA40250235CAAGATGAAGGTAGGTCTCGAGGCTATGAAACCCTGTCAGATTGAACCCG
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:40268280-40268299
AAGTAGTTTCTGTACTCAAAAACCCATCCA40268280CAAGATGAAGGTAGGTCTCGAGGCTATGAAAGCCAGGCAGATTGAACCCA
Malus domestica genome assembly, chromosome: 5.
OU696681.1:39541428-39541447
AAGTAGTTTCTGTACTCAAAAACCCATCCA39541428CAAGATGAAGGTAGGTCTCGAGGCTATGAAACCCTGTCAGATTGAACCCG
Malus domestica genome assembly, chromosome: 5.
OU696681.1:39559507-39559526
AAGTAGTTTCTGTACTAAAAAACCCATCCA39559507CAAGATGAAGGTAGGTCTCGAGGCTATGAAAGCCAGGCAGATTGAACCCA
Malus domestica genome assembly, chromosome: 5.
OU744546.1:39110262-39110281
AAGTAGTTTCTGTACTCAAAAACCCATCCA39110262CAAGATGAAGGTAGGTCTCGAGGCTATGAAACCCTGTCAGATTGAACCCG
Malus domestica genome assembly, chromosome: 5.
OU744546.1:39128335-39128354
AAGTAGTTTCTGTACTAAAAAACCCATCCA39128335CAAGATGAAGGTAGGTCTCGAGGCTATGAAAGCCAGGCAGATTGAACCCA
Malus domestica genome assembly, chromosome: 5.
OU744957.1:39571929-39571948
AAGTAGTTTCTGTACTCAAAAACCCATCCA39571929CAAGATGAAGGTAGGTCTCGAGGCTATGAAACCCAGTCAGATTGAACCCG
Malus domestica genome assembly, chromosome: 5.
OU744957.1:39590483-39590502
AAGTAGTTTCTGTACTCAAAAACCCATCCA39590483CAAGATGAAGGTAGGTCTCGAGGCTATGAAAGCCAGGCAGATTGAACCCA
Malus domestica genome assembly, chromosome: 5.
OU744995.1:40401145-40401164
AAGTAGTTTCTGTACTCAAAAACCCATCCA40401145CAAGATGAAGGTAGGTCTCGAGGCTATGAAACCCTGTCAGATTGAACCCG
Malus domestica genome assembly, chromosome: 5.
OU744995.1:40424546-40424565
AAGTAGTTTCTGTACTCAAAAACCCATCCA40424546CAAGATGAAGGTAGGTCTCGAGGCTATGAAAGCCAGGCAGATTGAACCCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGAGACCTACCTTCATCTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGAGACCTACCTTCATCTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.098 | 0.090 | search_plus_done; http://172.18.8.135:50400/match?q=CGAGACCTACCTTCATCTTG&k=0&no_gap=0&offset=0&limit=50
0.120 | 0.022 | search_minus_done; http://172.18.8.135:50400/match?q=CAAGATGAAGGTAGGTCTCG&k=0&no_gap=0&offset=0&limit=45
0.128 | 0.008 | cgi_end;

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