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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:50:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

36RDBRG_UP_100_B11_20JAN2006_093 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
ES931142.1:27-46
ACTTCGGTTTGACGGAAAGACCAGAT27CGAGACTCTTAAAAGACCGAAGACTGTCTGTCTGATCTGGGTTTTGATCT
0194180 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV096131.1:111-130
ATCGACTTCGGTTTGACGGAAAGACCAGAT111CGAGACTCTTAAAAGACCGAAGACTGTCTGATCTGGGTTTTGATCTCTCT
BNAOV1GH_T3_099_H12_22SEPT2007_082 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR444724.1:79-98
ATCGACTTCGGTTTGACGGAAAGACCAGAT79CGAGACTCTTAAAAGACCGAAGACTGTCTGATCTGGGTTTTGATCTCTCT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_14670.
FX702239.1:123-142
ATCGACTTCGGTTTGACGGAAAGACCAGAT123CGAGACTCTTAAAAGACCGAAGACTGTCTGTCTGATCTGGGTTTTGATCT
BN24DYSC_UP_091_D08_8FEB2008_058 BN24DYSC Brassica napus cDNA 5', mRNA sequence.
FG578353.1:667-686
AGAGAGATCAAAACCCAGATCAGACAGTCT667TCGGTCTTTTAAGAGTCTCGATCTGGTCTTTCCG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8735.
FX738166.1:1413-1432
AGATCAAAACCCAGATCAGACAGACAGTCT1413TCGGTCTTTTAAGAGTCTCGATCTGGTCTTTCCGTCAAACCGAAGTCGAT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:12136154-12136173
AGATCAAAACCCAGATCAGACAGACAGTCT12136154TCGGTCTTTTAAGAGTCTCGATCTGGTCTTTCCGTCAAACCGAAGTCGAT
Brassica napus genome assembly, chromosome: A09.
HG994363.1:11676348-11676367
AGAGAGATCAAAACCCAGATCAGACAGTCT11676348TCGGTCTTTTAAGAGTCTCGATCTGGTCTTTCCGTCAAACCGAAGTCGAT
Brassica rapa genome, scaffold: A09.
LR031568.1:11663432-11663451
AGATCAAAACCCAGATCAGACAGACAGTCT11663432TCGGTCTTTTAAGAGTCTCGATCTGGTCTTTCCGTCAAACCGAAGTCGAT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:11990141-11990160
AGATCAAAACCCAGATCAGACAGACAGTCT11990141TCGGTCTTTTAAGAGTCTCGATCTGGTCTTTCCGTCAAACCGAAGTCGAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGAGACTCTTAAAAGACCGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGAGACTCTTAAAAGACCGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.428 | 0.419 | search_plus_done; http://172.18.8.135:50400/match?q=CGAGACTCTTAAAAGACCGA&k=0&no_gap=0&offset=0&limit=50
0.618 | 0.190 | search_minus_done; http://172.18.8.135:50400/match?q=TCGGTCTTTTAAGAGTCTCG&k=0&no_gap=0&offset=0&limit=46
0.622 | 0.004 | cgi_end;

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