GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 08:42:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Dianthus caryophyllus mRNA, clone: CES07G02, 5' end sequence.
FY384886.1:193-212
CCACCACCACCACCACCACCACTACAACGT193CGTTACATTCCCCGTTATCGGTTTTTCACCAGCAGTATTTCGCCTGCAGG
Dianthus caryophyllus mRNA, clone: CES08A22, 5' end sequence.
FY385145.1:243-262
CCACCACCACCACCACCACCACTACAACGT243CGTTACATTCCCCGTTATCGGTTTTTCACCAGCAGTATTTCGCCTGCAGG
Dianthus caryophyllus mRNA, clone: CES11_O15, 5' end sequence.
FY386606.1:149-168
CCACCACCACCACCACCACCACTACAACGT149CGTTACATTCCCCGTTATCGGTTTTTCACCAGCAGTATTTCGCCTGCAGG
Dianthus caryophyllus mRNA, clone: CES14O01, 5' end sequence.
FY387726.1:201-220
CCACCACCACCACCACCACCACTACAACGT201CGTTACATTCCCCGTTATCGGTTTTTCACCAGCAGTATTTCGCCTGCAGG
Dianthus caryophyllus mRNA, clone: CES19P14, 5' end sequence.
FY389649.1:221-240
CCACCACCACCACCACCACCACTACAACGT221CGTTACATTCCCCGTTATCGGTTTTTCACCAGCAGTATTTCGCCTGCAGG
Dianthus caryophyllus mRNA, clone: CES25_D22, 5' end sequence.
FY391629.1:189-208
CCACCACCACCACCACCACCACTACAACGT189CGTTACATTCCCCGTTATCGGTTTTTCACCAGCAGTATTTCGCCTGCAGG
Dianthus caryophyllus mRNA, clone: CES30I19, 5' end sequence.
FY393619.1:248-267
CCACCACCACCACCACCACCACTACAACGT248CGTTACATTCCCCGTTATCGGTTTTTCACCAGCAGTATTTCGCCTGCAGG
TSA: Dianthus caryophyllus mRNA, contig: CAK09.610.C1.
FX297765.1:247-266
CCACCACCACCACCACCACCACTACAACGT247CGTTACATTCCCCGTTATCGGTTTTTCACCAGCAGTATTTCGCCTGCAGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGATAACGGGGAATGTAACG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGATAACGGGGAATGTAACG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.089 | 0.081 | search_plus_done; http://172.18.8.135:50400/match?q=CGATAACGGGGAATGTAACG&k=0&no_gap=0&offset=0&limit=50
0.958 | 0.868 | search_minus_done; http://172.18.8.135:50400/match?q=CGTTACATTCCCCGTTATCG&k=0&no_gap=0&offset=0&limit=50
0.963 | 0.005 | cgi_end;

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