GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 22:45:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS2BO91JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX899154.1:229-250
TTTCTTTTGCCCTCTCTCTGTTCCATTCTT229CGATAGTTCCATCAAAGGCACAACCGCTCCGAGCCTGCCAATCAAGACCAGT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_10462.
FX670919.1:156-177
TTTCTTTTGCCCTCTCTCTGTTCCATTCTT156CGATAGTTCCATCAAAGGCACAACCGCTCCGAGTCTGCCTATCAAGACCAGT
TSA: Raphanus sativus RS11222 mRNA sequence.
JT795769.1:194-215
TTTCTTTTGCCCTCTCTCTGTTCCATTCTT194CGATAGTTCCATCAAAGGCACAACCGCTCCGAGTCTGCCAATCAAGACCAGT
RS2BO91TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX894901.1:569-590
ACTGGTCTTGATTGGCAGGCTCGGAGCGGT569TGTGCCTTTGATGGAACTATCGAAGAATGGAACAGAGAGAGGGCAAAAGAAA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_81504.
FX779631.1:239-260
ACTGGTCTTGATAGGCAGACTCGGAGCGGT239TGTGCCTTTGATGGAACTATCGAAGAATGGAACAGAGAGAGGTCAAAAGAAA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:40202588-40202609
ACTGGTCTTGATAGGCAGACTCGGAGCGGT40202588TGTGCCTTTGATGGAACTATCGAAGAATGGAACAGAGAGAGGTCAAAAGAAA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:40202588-40202609
ACTGGTCTTGATAGGCAGACTCGGAGCGGT40202588TGTGCCTTTGATGGAACTATCGAAGAATGGAACAGAGAGAGGTCAAAAGAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGATAGTTCCATCAAAGGCACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGATAGTTCCATCAAAGGCACA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.227 | 0.219 | search_plus_done; http://172.18.8.135:50400/match?q=CGATAGTTCCATCAAAGGCACA&k=0&no_gap=0&offset=0&limit=50
0.351 | 0.124 | search_minus_done; http://172.18.8.135:50400/match?q=TGTGCCTTTGATGGAACTATCG&k=0&no_gap=0&offset=0&limit=47
0.354 | 0.003 | cgi_end;

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