GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 18:02:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Chanos chanos genome assembly, chromosome: 8.
LR697113.1:3824324-3824343
TCACTAAACCAGCTCTCTGGAACACCCCCC3824324CGATGAAGACGATGCTATTGTGTGTAAACAGTGTGTAATCCCTGTGTGTG
EST1071099 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT560459.1:100-119
CATTGATCTCGATGGTGAAGATTACGATGA100CGATGAAGACGATGCTATTGAAGAAGACGGTGAAGATGAAGATGAAGATG
UFL_433_89 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES822932.1:111-130
CATTGATCTCGATGGTGAAGATTACGATGA111CGATGAAGACGATGCTATTGAAGAAGACGGTGAAGATGAAGATGAAGATG
mhczaa0_028290.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_028290.z1, mRNA sequence.
JG837665.1:242-261
CATTGATCTCGACGGTGAAGATTACGATGA242CGATGAAGACGATGCTATTGAAGAAGACGATGAAGATGAAGATGAAGATG
mhczaa0_010358.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_010358.z1, mRNA sequence.
JG844774.1:247-266
CATTGATCTCGACGGTGAAGATTACGATGA247CGATGAAGACGATGCTATTGAAGAAGACGATGAAGATGAAGATGAAGATG
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:8403804-8403823
CATTGATCTCGATGGTGAAGATTACGATGA8403804CGATGAAGACGATGCTATTGAAGAAGACGATGAAGATGAAGATGAAGATG
Exobasidium cylindrosporum strain YG638 chromosome 3.
CP096880.1:874165-874184
CACATTGATCACTACGACATTATTTCTGCT874165CAATAGCATCGTCTTCATCGATGAGCTGTTTCTAGTTGCTACGCTGATTT
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:117252062-117252081
CATCTTCATCTTCATCTTCATCGTCTTCTT117252062CAATAGCATCGTCTTCATCGTCATCGTAATCTTCACCATCGAGATCAATG
Aegilops umbellulata cultivar TA1851 chromosome 2U.
CP136055.1:408474603-408474622
TCGTAGAGGTGTTTAGGTGAAGCCCTGCGT408474603CAATAGCATCGTCTTCATCGTCATCACGCCGTCGTGCTGACGGAACTCTC
Bradyrhizobium sp. A19 chromosome, complete genome.
CP088156.1:6975747-6975766
GGGCGGGAAGGGCCAGTTCTCGGTGGCCGG6975747CAATAGCATCGTCTTCATCGCCGGCCAGATCGAGGACCGCAATTGTCCGG
Ormia ochracea genome assembly, chromosome: 3.
OY727107.1:646825-646844
ATGTTTCTTTGTTTTGGGCTTCTCAAACTT646825CAATAGCATCGTCTTCATCGTCCGCCTCATTATCACTGTTTCCTAATACG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGATGAAGACGATGCTATTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGATGAAGACGATGCTATTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.383 | 0.374 | search_plus_done; http://172.18.8.135:50400/match?q=CGATGAAGACGATGCTATTG&k=0&no_gap=0&offset=0&limit=50
0.417 | 0.034 | search_minus_done; http://172.18.8.135:50400/match?q=CAATAGCATCGTCTTCATCG&k=0&no_gap=0&offset=0&limit=44
0.420 | 0.003 | cgi_end;

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