GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:06:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

V033D10 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence.
BU877387.1:115-134
GGGAGTACAGATTTCCTCGCTTGATGAAGA115CGATGAGGTTGAAGAAGTCGTTGAAGAAGAAGAAGAAGAAGGTGACGATA
TSA: Lactuca serriola Serrassy_T_P2_46999 mRNA sequence.
JO035611.1:800-819
CCTGCGGAATGCCGGTGCTCATTTCCACGG800CGATGAGGTTGAAGAAGTCGGGTACCGTGTTCGATGTGCCGCAGCAGCCG
Populus nigra genome assembly, chromosome: 4.
OX637675.1:16230146-16230165
GGGAGTACAGATTTCCTCGCTTGATGAAGA16230146CGATGAGGTTGAAGAAGTCGTTGAAGAAGAAGAAGAAGAAGGTGACGATA
Corynebacterium coyleae strain FDAARGOS_1492 chromosome, complete genome.
CP083648.1:497441-497460
AGATCTCCAGCGGGAAGAAGATCAAGATGG497441CGATGAGGTTGAAGAAGTCGTGCACGGTCGCCATGGAGAAACCGTTTTTG
Isoptericola variabilis 225, complete genome.
CP002810.1:871706-871725
CCGCCGCGCGTTCTCGGCCGCGACGGTCCA871706CGACTTCTTCAACCTCATCGCGGTCGCGATCTTCCTGCCGCTCGAGCTCG
Corynebacterium ureicelerivorans strain IMMIB RIV-2301, complete genome.
CP009215.1:2033689-2033708
CCAGCGCGGTTTCTCTATGGCCACCGTGCA2033689CGACTTCTTCAACCTCATCGCCATCCTCATCTTCTTCCCGCTGGAGATTC
Corynebacterium glaucum strain DSM 30827 chromosome, complete genome.
CP019688.1:2305400-2305419
CCAGCGCGGTTTCTCCATGGCAACCGTGCA2305400CGACTTCTTCAACCTCATCGCCATCCTGATCTTCTTCCCGCTGGAGATGT
Tomitella fengzijianii strain HY188 chromosome, complete genome.
CP041765.1:2046352-2046371
CCGCCGCGCATTCGCCGCGTCGACGGTGCA2046352CGACTTCTTCAACCTCATCGCGGTCGCCATCCTGCTTCCGCTGGAGATGA
Corynebacterium coyleae strain DSM 44184 chromosome, complete genome.
CP047198.1:2267244-2267263
CAAAAACGGTTTCTCCATGGCGACCGTGCA2267244CGACTTCTTCAACCTCATCGCCATCTTGATCTTCTTCCCGCTGGAGATCT
Corynebacterium glaucum strain DSM 44530 chromosome, complete genome.
CP047358.1:2268488-2268507
CCAGCGCGGTTTCTCCATGGCAACCGTGCA2268488CGACTTCTTCAACCTCATCGCCATCCTGATCTTCTTCCCGCTGGAGATGT
Corynebacterium lujinxingii strain zg-917 chromosome, complete genome.
CP061032.1:2124792-2124811
CAAGAACGGTTTCTCGATGGCGACCGTGCA2124792CGACTTCTTCAACCTCATCGCCATCCTCATCTTCTTCCCGCTCGAGATCT
Corynebacterium coyleae strain FDAARGOS 1425 chromosome, complete genome.
CP077302.1:746884-746903
CAAAAACGGTTTCTCCATGGCGACCGTGCA746884CGACTTCTTCAACCTCATCGCCATCTTGATCTTCTTCCCGCTGGAGATCT
Ruania suaedae strain LR1S40 chromosome, complete genome.
CP088018.1:987912-987931
CCGGCGCGCATTCGCCGCCGCCACCGTGCA987912CGACTTCTTCAACCTCATCGCCGTCGCCATCCTGCTGCCGCTGGAGCTGC
Heterobilharzia americana genome assembly, chromosome: 4.
OX104106.1:7562931-7562950
TAAAAACAGGTCTTGCGTTGCTTGCCATTT7562931CGACTTCTTCAACCTCATCGCTAGTAGCCGCGAGGCATTGTTCTATACTT
Heterobilharzia americana genome assembly, chromosome: 4.
OX104130.1:6986099-6986118
TAAAAACAGGTCTTGCGTTGCTTGCCATTT6986099CGACTTCTTCAACCTCATCGCTAGTAGCCGCGAGGCATTGTTCTATACTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGATGAGGTTGAAGAAGTCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGATGAGGTTGAAGAAGTCG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.344 | 0.335 | search_plus_done; http://172.18.8.135:50400/match?q=CGATGAGGTTGAAGAAGTCG&k=0&no_gap=0&offset=0&limit=50
0.445 | 0.101 | search_minus_done; http://172.18.8.135:50400/match?q=CGACTTCTTCAACCTCATCG&k=0&no_gap=0&offset=0&limit=46
0.452 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).