GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 17:49:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02, pooled multiple clones, *** SEQUENCING IN PROGRESS ***, 126 unordered pieces.
AC234733.2:62311-62330
ACCATTATGCACCCATATGCCCAAAACTTT62311CGCAACACTCAACCCTAACAAATTTTTTTTTATAATTCTTTATTGTTTTC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02, pooled multiple clones, *** SEQUENCING IN PROGRESS ***, 98 unordered pieces.
AC234734.2:185876-185895
ACCATTATGCACCCATATGCCCAAAACTTT185876CGCAACACTCAACCCTAACAAATTTTTTTTTATAATTCTTTATTGTTTTC
Brassica napus genome assembly, chromosome: A07.
HG994361.1:25524112-25524131
ACCATTATGTACCCATATGCCCAAAACTTT25524112CGCAACACTCAACCCTAACAAAATTTTTTTTTATCATTCTTTATTGTTTT
Brassica rapa genome, scaffold: A07.
LR031574.1:24430682-24430701
ACCATTATGTACCCATATGCCCAAAACTTT24430682CGCAACACTCAACCCTAACAAAAATTTTTTTTATCATTCTTTATTGTTTT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:24768922-24768941
ACCATTATGTACCCATATGCCCAAAACTTT24768922CGCAACACTCAACCCTAACAAAAATTTTTTTTATCATTCTTTATTGTTTT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_17331.
FX699716.1:1668-1687
AAAACAATAAAGAATTATAAAAAAAAAATT1668TGTTAGGGTTGAGTGTTGCGAAAGTTTTGGGCATATGGGTGCATAATGGT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_33212.
FX787437.1:447-466
AAAACAATAAAGAATTATAAAAAAAAAATT447TGTTAGGGTTGAGTGTTGCGAAAG
KBrB024E22R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB024E22, genomic survey sequence.
DX028410.1:774-793
AAAACAATAAAGAATTATAAAAAAAAAATT774TGTTAGGGTTGAGTGTTGCGAAAGTTTTGGGCATATGGGTGCATAATGGT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034I14, complete sequence.
AC189311.2:2047-2066
AAAACAATAAAGAATTATAAAAAAAAAATT2047TGTTAGGGTTGAGTGTTGCGAAAGTTTTGGGCATATGGGTGCATAATGGT
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:3859693-3859712
AAAACAATAAAGAATGATAAAAAAAAATTT3859693TGTTAGGGTTGAGTGTTGCGAAAGTTTTGGGCATATGGGTACATAATGGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGCAACACTCAACCCTAACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGCAACACTCAACCCTAACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.108 | 0.099 | search_plus_done; http://172.18.8.135:50400/match?q=CGCAACACTCAACCCTAACA&k=0&no_gap=0&offset=0&limit=50
0.156 | 0.048 | search_minus_done; http://172.18.8.135:50400/match?q=TGTTAGGGTTGAGTGTTGCG&k=0&no_gap=0&offset=0&limit=45
0.160 | 0.003 | cgi_end;

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