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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:02:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

QGI12H23.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI12H23, mRNA sequence.
BQ871671.1:425-444
TGCAAACCTATTCAGACCGGTGGGGCTTGT425TTTGAGCCGAATAATGTGCGGGCCCATGCCGCGTTTATCATGAACGCTTT
QGF10M06.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGF10M06, mRNA sequence.
BQ986905.1:413-432
TGCAAACCTATTCAGACCGGTGGGGCTTGT413TTTGAGCCGAATAATGTGCGGGCCCATGCCGCGTTTATCATGAACGCTTT
QGF21E12.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGF21E12, mRNA sequence.
BQ990851.1:413-432
TGCAAACCTATTCAGACCGGTGGGGCTTGT413TTTGAGCCGAATAATGTGCGGGCCCATGCCGCGTTTATCATGAACGCTTT
QGF27A06.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGF27A06, mRNA sequence.
BQ992893.1:413-432
TGCAAACCTATTCAGACCGGTGGGGCTTGT413TTTGAGCCGAATAATGTGCGGGCCCATGCCGCGTTTATCATGAACGCTTT
QGF5J06.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGF5J06, mRNA sequence.
BQ993826.1:413-432
TGCAAACCTATTCAGACCGGTGGGGCTTGT413TTTGAGCCGAATAATGTGCGGGCCCATGCCGCGTTTATCATGAACGCTTT
QGF6E05.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGF6E05, mRNA sequence.
BQ994081.1:417-436
TGCAAACCTATTCAGACCGGTGGGGCTTGT417TTTGAGCCGAATAATGTGCGGGCCCATGCCGCGTTTATCATGAACGCTTT
CLLX9838.b1_K12.ab1 CLL(XYZ) lettuce saligna Lactuca saligna cDNA clone CLLX9838, mRNA sequence.
DW057250.1:303-322
TGCAAACCTATTCAGACTGGTGGGGCTTGT303TTTGAGCCGAATAATGTGCGGGCCCACGCCGCGTTCATCATGAATGCTTT
CLVX12864.b1_P23.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVX12864, mRNA sequence.
DW147815.1:43-62
ATTGCAACCTATTCGACTGGTGGGGCTTGT43TTTGAGCCGAATAATGTGCGGGCCCACGCCGCGTTTATCATGAATGCTTT
TSA: Lactuca sativa Letassy_X1_17551 mRNA sequence.
JI581476.1:1417-1436
TGCAAACCTATTCAGACCGGTGGGGCTTGT1417TTTGAGCCGAATAATGTGCGGGCCCATGCCGCGTTTATCATGAACGCTTT
TSA: Lactuca serriola Serrassy_T_P2_54882 mRNA sequence.
JO028132.1:1370-1389
TGCAAACCTATTCAGACCGGTGGGGCTTGT1370TTTGAGCCGAATAATGTGCGGGCCCATGCCGCGTTTATCATGAACGCTTT
Lactuca saligna genome assembly, chromosome: 8.
OX465084.1:14055160-14055179
TGCAAACCTATTCAGACTGGTGGGGCTTGT14055160TTTGAGCCGAATAATGTGCGGGCCCACGCCGCGTTCATCATGAATGCTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGCACATTATTCGGCTCAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGCACATTATTCGGCTCAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.091 | 0.083 | search_plus_done; http://172.18.8.135:50400/match?q=CGCACATTATTCGGCTCAAA&k=0&no_gap=0&offset=0&limit=50
0.351 | 0.260 | search_minus_done; http://172.18.8.135:50400/match?q=TTTGAGCCGAATAATGTGCG&k=0&no_gap=0&offset=0&limit=50
0.359 | 0.008 | cgi_end;

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