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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 00:37:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Musa acuminata AAA Group Unigene333_B1 mRNA sequence.
JV332642.1:115-134
AGAACTTGGCTGCCTCGGAGGGGGAGAACC115CGCAGGAGTTCACGAGGTATTCCACCATGAAGTGGGGATCTGGAGACATG
TSA: Musa acuminata AAA Group Unigene1091_NK1 mRNA sequence.
JV433892.1:115-134
AGAACTTGGCTGCCTCGGAGGGGGAGAACC115CGCAGGAGTTCACGAGGTATTCCACCATGAAGTGGGGATCTGGAGACATG
Seq_sg_08-B24.f MAMB Musa acuminata subsp. malaccensis genomic, genomic survey sequence.
HN246322.1:107-126
AGACCTTGGCTGCCTCGGAGGGGGAGAACC107CGCAGGAGTTCACGAGGTATTCCACCATGAAGTGGGGATCTGGAGACATG
Seq_sg_37-G06.r MAMB Musa acuminata subsp. malaccensis genomic, genomic survey sequence.
HN255501.1:137-156
AGAACTTGGCTGCCTCGGAGGGGGAGAACC137CGCAGGAGTTCACGAGGTATTCCACCATGAAGTGGGGATCTGGAGACATG
Musa troglodytarum cultivar karat chromosome 9.
CP097511.1:4912701-4912720
AGAACTTGGCTGCCTCGGAGGGGGAGAACC4912701CGCAGGAGTTCACGAGGTATTCCACCATGAAGTGGGGATCTGGAGACTTG
Musa troglodytarum cultivar karat chromosome 9.
CP097511.1:4958365-4958384
AGAACTTGGCTGCCTCGGAGGGGGAGAACC4958365CGCAGGAGTTCACGAGGTATTCCACCATGAAGTGGGGATCTGGAGATGTG
Musa troglodytarum cultivar karat chromosome 9.
CP097511.1:4963560-4963579
AGAACTTGGCTGCCTCGGAGGGGGAGAACC4963560CGCAGGAGTTCACGAGGTATTCCACCATGAAGTGGGGATCAGGAGATGCG
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:36766973-36766992
AGAACATGGCTGCCTCGGAGGGAGAGAACC36766973CGCAGGAGTTCACGAGGTATTCCACCATGGAGTGGGGATCTGGAGATACG
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:36784328-36784347
AGACCTTGGCTGCCTCGGAGGGGGAGAACC36784328CGCAGGAGTTCACGAGGTATTCCACCATGAAGTGGGGATCTGGAGACATG
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:36795332-36795351
AGAACTTGGCTGCCTCGGAGGGGGAGAACC36795332CGCAGGAGTTCACGAGGTATTCCACCATGAAGTGGGGATCTGGAGAGATG
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:36798697-36798716
AGAACTTGGCTGCCTCGGAGGGGGAGAACC36798697CGCAGGAGTTCACGAGGTATTCCACCATGAAGTGGGGATCTGGAGATATG
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:40488314-40488333
AGAACATGGCTGCCTCGGAGGGAGAGAACC40488314CGCAGGAGTTCACGAGGTATTCCACCATGGAGTGGGGATCTGGAGATACG
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:40505669-40505688
AGACCTTGGCTGCCTCGGAGGGGGAGAACC40505669CGCAGGAGTTCACGAGGTATTCCACCATGAAGTGGGGATCTGGAGACATG
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:40516673-40516692
AGAACTTGGCTGCCTCGGAGGGGGAGAACC40516673CGCAGGAGTTCACGAGGTATTCCACCATGAAGTGGGGATCTGGAGAGATG
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:40520038-40520057
AGAACTTGGCTGCCTCGGAGGGGGAGAACC40520038CGCAGGAGTTCACGAGGTATTCCACCATGAAGTGGGGATCTGGAGATATG
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A10.
HG996476.1:34026652-34026671
AGACCTTGGCTGCCTCGGAGGGGGAGAACC34026652CGCAGGAGTTCACGAGGTATTCCACCATGAAGTGGGGATCTGGAGACATG
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A10.
HG996476.1:34037655-34037674
AGAACTTGGCTGCCTCGGAGGGGGAGAACC34037655CGCAGGAGTTCACGAGGTATTCCACCATGAAGTGGGGATCTGGAGAGATG
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A10.
HG996476.1:34041017-34041036
AGAACTTGGCTGCCTCGGAGGGGGAGAACC34041017CGCAGGAGTTCACGAGGTATTCCACCATGAAGTGGGGATCTGGAGATATG
Embrapa_Musa_ABB_Stressed_Cachaco_EL02TF Embrapa_Musa_Cachaco_ABB_Stressed Musa ABB Group cDNA, mRNA sequence.
FL664672.1:232-251
CACATCTCTTGATCCCCACTTCATGGTGGA232ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCATGTTCT
Embrapa_Musa_ABB_Stressed_Cachaco_FA68TF Embrapa_Musa_Cachaco_ABB_Stressed Musa ABB Group cDNA, mRNA sequence.
FL666856.1:106-125
CATATCTCCAGATCCCCACTTCATGGTGGA106ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTTCGAGGCAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:36704272-36704291
CATCTCTCCAGATCCCCACTTCATGGTGGA36704272ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:36709780-36709799
CATGTCTCCAGATCCCCACTTCATGGTGGA36709780ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGGTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:36955638-36955657
CACATCTCCAGATCCCCACTCCATGGTGGA36955638ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCATGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:36964235-36964254
CACATCTCCTGATCCCCACTTCACGGTGGA36964235ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:36984747-36984766
CATATCTCCAGATCCCCACTTCATGGTGAA36984747ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:36992996-36993015
CATGTCTCTAGATCCCCAGTTCATGGTGGA36992996ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGTCCGAGGCAGCA
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:36999481-36999500
CATATCTCCAGATCCCCACTTCATGGTGAA36999481ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:37021039-37021058
CATGTCTCCAGATCCCCACTTCATGGTGGA37021039ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:37026484-37026503
CATATCTCCAGATCCCCACTTCATGGTGGA37026484ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCATGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:37037548-37037567
CATGTCTCCAGATCCCCACTTCATGGTGGA37037548ATACCTCGTGAACTCCTGCGGGTTCTCCTCCTCCGAGGCAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:37042342-37042361
CATATCTCCAGATCCCCACTTCATGGTGAC37042342ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGTAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:37048306-37048325
CATATCTCCAGATCCCCACTTCATGGTGAA37048306ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:37070856-37070875
GTGAATTCCTGATACCCACTTCATGGTGAA37070856ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:37071619-37071638
CATATCTCCAGATCCGAACTTCATGGTGGA37071619ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:37077699-37077718
CATATCTCCAGATCCCCACTTCATGGTGGA37077699ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:37105578-37105597
CATATCTCCAGATCCCCACTTCATGGTGGA37105578ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCATGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:37139878-37139897
CATGTCTCCAGATCCCCACTTCATGGTGGA37139878ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGAAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:37146039-37146058
CACATCTCCTGATCCCCACTTCGTGATGGA37146039ATACCTCGTGAACTCCTGCGGATTCTCCCCCTCCGAGGTAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 10.
CP126379.1:37172571-37172590
CACATCTCCTAGTCCCCACTTCATGATGGA37172571ATACCTCGTGAACTCCTGCGGATTCTCCCCCTTCGAGGCAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:40425613-40425632
CATCTCTCCAGATCCCCACTTCATGGTGGA40425613ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:40431121-40431140
CATGTCTCCAGATCCCCACTTCATGGTGGA40431121ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGGTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:40676979-40676998
CACATCTCCAGATCCCCACTCCATGGTGGA40676979ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCATGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:40685576-40685595
CACATCTCCTGATCCCCACTTCACGGTGGA40685576ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:40706088-40706107
CATATCTCCAGATCCCCACTTCATGGTGAA40706088ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:40714337-40714356
CATGTCTCTAGATCCCCAGTTCATGGTGGA40714337ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGTCCGAGGCAGCA
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:40720822-40720841
CATATCTCCAGATCCCCACTTCATGGTGAA40720822ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:40742380-40742399
CATGTCTCCAGATCCCCACTTCATGGTGGA40742380ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:40747825-40747844
CATATCTCCAGATCCCCACTTCATGGTGGA40747825ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCATGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:40758889-40758908
CATGTCTCCAGATCCCCACTTCATGGTGGA40758889ATACCTCGTGAACTCCTGCGGGTTCTCCTCCTCCGAGGCAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:40763683-40763702
CATATCTCCAGATCCCCACTTCATGGTGAC40763683ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGTAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:40769647-40769666
CATATCTCCAGATCCCCACTTCATGGTGAA40769647ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa acuminata subsp. malaccensis isolate AA chromosome 21.
CP126390.1:40792197-40792216
GTGAATTCCTGATACCCACTTCATGGTGAA40792197ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa schizocarpa genome assembly, chromosome: S10.
LS990924.1:37859153-37859172
CATGTCTCCAGATCCCCCCTTCATGGTGGA37859153ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGGTCT
Musa schizocarpa genome assembly, chromosome: S10.
LS990924.1:38086553-38086572
CACATCTCCAGATCCCCACTCCATGGTGGA38086553ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCATGTTCT
Musa schizocarpa genome assembly, chromosome: S10.
LS990924.1:38102958-38102977
CACATCTCCTGATCCCCACTTCACGGTGGA38102958ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa schizocarpa genome assembly, chromosome: S10.
LS990924.1:38149547-38149566
CATATCTCCAGATCCCCACTTCATGGTGAA38149547ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa schizocarpa genome assembly, chromosome: S10.
LS990924.1:38180686-38180705
CATGTCTCCAGATCCCCACTTCATGGTGGA38180686ATACCTCGTGAACTCCTGCGGATTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa schizocarpa genome assembly, chromosome: S10.
LS990924.1:38186328-38186347
CATATCTCCAGATCCCCACTTCATGGTGGA38186328ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa schizocarpa genome assembly, chromosome: S10.
LS990924.1:38198530-38198549
CACATCTCCTGATCCCCACTTCATGGTGGA38198530ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGTAGCCAAGTTCT
Musa schizocarpa genome assembly, chromosome: S10.
LS990924.1:38204625-38204644
CATATCTCCAGATCCCCACTTCATGGTGGA38204625ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa schizocarpa genome assembly, chromosome: S10.
LS990924.1:38215052-38215071
CACATCTCCTGATCCCCACTTCACGGTGGA38215052ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCGAGGCAGCCAAGTTCT
Musa schizocarpa genome assembly, chromosome: S10.
LS990924.1:38229735-38229754
CATATCTCCAGATCCCCACTTCATGGTGGA38229735ATACCTCGTGAACTCCTGCGGGTTCTCCCCCTCCAAGGCAGCCAAGTTCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGCAGGAGTTCACGAGGTAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGCAGGAGTTCACGAGGTAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.483 | 0.474 | search_plus_done; http://172.18.8.135:50400/match?q=CGCAGGAGTTCACGAGGTAT&k=0&no_gap=0&offset=0&limit=50
0.782 | 0.299 | search_minus_done; http://172.18.8.135:50400/match?q=ATACCTCGTGAACTCCTGCG&k=0&no_gap=0&offset=0&limit=32
0.812 | 0.029 | cgi_end;

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