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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-03-14 18:47:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

RS2AL09JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW728503.1:14-34
GCGACGACAAAAA14CGCATACGCAACATCATTGTCATGTATGTCCTAACATCATCCAAGGATCAA
RR3ES32JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD545261.1:31-51
TTTTTTTTTTTTTTTTTCAGACGACAAAAA31CGCATACGCAACATCATTGTCATGTCCTAACATCATCCAAGGATTAAACAT
Raphanus sativus mRNA, clone: RSCL18K05, 5' end sequence.
FY439094.1:4-24
AAA4CGCATACGCAACATCATTGTCATGTCCTAACATCATCCAAGGATCAAACAT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:3334566-3334586
ATGAGATCAAAAGAGATAAGACGACAAAAA3334566CGCATACGCAACATCATTGTCATGTCCTAACATCATCCAAGGATCAAACAT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:3334566-3334586
ATGAGATCAAAAGAGATAAGACGACAAAAA3334566CGCATACGCAACATCATTGTCATGTCCTAACATCATCCAAGGATCAAACAT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_1538.
FX668939.1:1531-1551
ATGTTTGATCCTTGGATGATGTTAGGACAT1531GACAATGATGTTGCGTATGCGTTTTTGTCGTCTTAAAAAAAAA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_6471.
FX758644.1:1706-1726
ATGTTTGATCCTTGGATGATGTTAGGACAT1706GACAATGATGTTGCGTATGCGTTTTTGTCGTCTTAAAAAAAAA
TSA: Raphanus sativus RS14217 mRNA sequence.
JT798764.1:1035-1055
ATGTTTGATCCTTGGATGATGTTAGGACAT1035GACAATGATGTTGCGTATGCGTTTTTGTCGTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGCATACGCAACATCATTGTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGCATACGCAACATCATTGTC | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.574 | 0.565 | search_plus_done; http://172.18.8.135:50400/match?q=CGCATACGCAACATCATTGTC&k=0&no_gap=0&offset=0&limit=50
0.711 | 0.138 | search_minus_done; http://172.18.8.135:50400/match?q=GACAATGATGTTGCGTATGCG&k=0&no_gap=0&offset=0&limit=45
0.713 | 0.002 | cgi_end;

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