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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:07:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH004_00590m, 5' end sequence.
AB450692.1:133-155
TCGTGTTCGGCACTCTGACCAAATTGGTGG133CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCAGCTACCTAG
Mdlr7008E04.g1 Apple_EST_Mdlr Malus domestica cDNA, mRNA sequence.
DR991437.1:397-419
TCGTGTTCGGCCCTCTGACCAAATTGGTGG397CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCAGCAGCAGCT
010616AVBC004904HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC004904, mRNA sequence.
EB127415.1:398-420
TCGTGTTCGGCCCTCTGACCAAATTGGTGG398CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCAGCAGCAGCT
010917AVBC042006PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC042006, mRNA sequence.
EB128869.1:33-55
CTGTGTTCGGCCCTCTGACCAAATTGGTGG33CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCAGCAGCAGCT
011022ABEA002924HT (ABEA) Royal Gala seedling leaves infected with Venturia inaequalis Malus domestica cDNA clone ABEA002924, mRNA sequence.
EB147731.1:382-404
TCGTGTTCGGCCCTCTGACCAAATTGGTGG382CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCAGCAGCAGCT
011022ABEA003598HT (ABEA) Royal Gala seedling leaves infected with Venturia inaequalis Malus domestica cDNA clone ABEA003598, mRNA sequence.
EB148169.1:411-433
TCGTGTTCGGCCCTCTGACCAAATTGGTGG411CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCAGCAGCAGCT
011030ABEA006947HT (ABEA) Royal Gala seedling leaves infected with Venturia inaequalis Malus domestica cDNA clone ABEA006947, mRNA sequence.
EB150601.1:382-404
TCGTGTTCGGCCCTCTGACCAAATTGGTGG382CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCAGCAGCAGCT
Pyrus pyrifolia mRNA, clone: NFR4_17_82, 5' end sequence, expressed in fruit.
HX755113.1:149-171
TCGTGTTCGGCACTCTGACCAAATTGGTGG149CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCAGCTACCTAG
Pyrus pyrifolia mRNA, clone: NLE2_05_90, 5' end sequence, expressed in leaf.
HX767159.1:102-124
TCGTGTTCGGCACTCTGACCAAATTGGTGG102CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCAGCTACCTAG
TSA: Pyrus pyrifolia mRNA, contig: contig_614revcomp.
FX433681.1:267-289
TCGTGTTCGGCACTCTGACCAAATTGGTGG267CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCAGCTACCTAG
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141913.1:22153212-22153234
TCGTGTTCGGCACTCTGACCAAATTGGTGG22153212CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCAGCAGCAGCA
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141930.1:23051776-23051798
TCGTGTTCGGCCCTCTGACCAAATTGGTGG23051776CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCAGCAGCAGCT
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141956.1:22083526-22083548
TCGTGTTCGGCACTCTGACCAAATTGGTGG22083526CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCAGCAGCAGCA
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141973.1:21407181-21407203
TCGTGTTCGGCCCTCTGACCAAATTGGTGG21407181CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCAGCAGCAGCT
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143361.1:22555170-22555192
TCGTGTTCGGCCCTCTGACCAAATTGGTGG22555170CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCTACCTAGAGA
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143378.1:21372058-21372080
TCGTGTTCGGCACTCTGACCAAATTGGTGG21372058CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCAGCAGCAGCT
Malus sylvestris genome assembly, chromosome: 4.
OU696506.1:22573748-22573770
TCGTGTTCGGCCCTCTGACCAAATTGGTGG22573748CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCAGCAGCAGCT
Malus domestica genome assembly, chromosome: 4.
OU744545.1:22780295-22780317
TCGTGTTCGGCCCTCTGACCAAATTGGTGG22780295CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCAGCAGCAGCT
Malus domestica genome assembly, chromosome: 4.
OU744956.1:23064534-23064556
TCGTGTTCGGCCCTCTGACCAAATTGGTGG23064534CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCAGCAGCAGCT
Malus domestica genome assembly, chromosome: 4.
OU744994.1:22885830-22885852
TCGTGTTCGGCCCTCTGACCAAATTGGTGG22885830CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCTACCTAGAGA
Pyrus communis genome assembly, chromosome: 17.
OY757084.1:15140982-15141004
TCGTGTTCGGCACTCTGACCAAATTGGTGG15140982CGCATTAAAGTCTGGCTTTCTTCACAAGTTACACAGCAGCAGCAGCTACCTAG
Malus domestica genome assembly, chromosome: 4.
OU696680.1:22367061-22367083
AGCTGCTGCTGCTGCTGCTGTGTAACTTGT22367061GAAGAAAGCCAGACTTTAATGCGCCACCAATTTGGTCAGAGGGCCGAACACGA
Malus x robusta genome assembly, chromosome: 17.
OY720341.1:8109571-8109593
AGCTGCTGCTGCTGCTGCTGTGTAACTTGT8109571GAAGAAAGCCAGACTTTAATGCGCCACCAATTTGGTCAGAGGGCCGAACACGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGCATTAAAGTCTGGCTTTCTTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGCATTAAAGTCTGGCTTTCTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.649 | 0.640 | search_plus_done; http://172.18.8.135:50400/match?q=CGCATTAAAGTCTGGCTTTCTTC&k=0&no_gap=0&offset=0&limit=50
0.765 | 0.116 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGAAAGCCAGACTTTAATGCG&k=0&no_gap=0&offset=0&limit=29
0.766 | 0.002 | cgi_end;

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