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2025-04-11 23:14:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Dianthus caryophyllus mRNA, clone: CES04N06, 5' end sequence.
FY383918.1:553-572

CTTGAATCTCTTAGAGCAAAGAAGGGCATC553CGCCACTAAACCTTTTGCTCTTTTCAGACAACTTATGTTATTTTCTCATT

TSA: Dianthus caryophyllus mRNA, contig: CAK09.316.C2.
FX297102.1:699-718

CTTGAATCTCTTAGAGCAAAGAAGGGCATC699CGCCACTAAACCTTTTGCTCTTTTCAGACAACTTATGTTATTTTCTCATT

TSA: Dianthus superbus Ds_CL5771Contig1 mRNA sequence.
JL386793.1:76-95

ATGAGAAAAATAACATAAGTTGTCTGAAAA76GAGCAAAAGGTTTAGTGGCGGATGCCCTTCTTTGCTCTAAGAGATTCAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.232 | 0.223 | search_plus_done; http://172.18.8.135:50400/match?q=CGCCACTAAACCTTTTGCTC&k=0&no_gap=0&offset=0&limit=50
0.315 | 0.083 | search_minus_done; http://172.18.8.135:50400/match?q=GAGCAAAAGGTTTAGTGGCG&k=0&no_gap=0&offset=0&limit=48
0.316 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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