GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:07:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Pyrus x bretschneideri Unigene54202_XinShao mRNA sequence.
JR643686.1:9-32
CTAGGACG9CGCCCTAACCCTATTTACTTCTGGTACCTTCTGCTCTCTCTCTCGCGGAGTAGC
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:19728320-19728343
AAATATTCATAAACGGGTTAGACTAGGACG19728320CGCCCTAACCCTATTTACTTCTGGTACCTTCTGCTCTCTCTCTCTCTCTCTCTC
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:36640354-36640377
GAGAGAGAGAGAGAGAGAGAGCAGAAGGTA36640354CCAGAAGTAAATAGGGTTAGGGCGCGTCCTAGTCTAACCCGTTTATGAATATTT
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:31709052-31709075
GAGAGAGAGAGAGAGAGAGAGCAGAAGGTA31709052CCAGAAGTAAATAGGGTTAGGGCGCGTCCTAGTCGAACCCGTTTATGAATATTT
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:35635817-35635840
GAGAGAGAGAGAGAGAGAGAGCAGAAGGTA35635817CCAGAAGTAAATAGGGTTAGGGCGCGTCCTAGTCTAACCCGTTTATGAATATTT
Malus domestica genome assembly, chromosome: 15.
OU696691.1:36864375-36864398
GAGAGAGAGAGAGAGAGAGAGCAGAAGGTA36864375CCAGAAGTAAATAGGGTTAGGGCGCGTCCTAGTCTAACCCGTTTATGAATATTT
Malus domestica genome assembly, chromosome: 15.
OU744556.1:36647256-36647279
GAGAGAGAGAGAGAGAGAGAGCAGAAGGTA36647256CCAGAAGTAAATAGGGTTAGGGCGCGTCCTAGTCTAACCCGTTTATGAATATTT
Malus domestica genome assembly, chromosome: 15.
OU744967.1:36774116-36774139
GAGAGAGAGAGAGAGAGAGAGCAGAAGGTA36774116CCAGAAGTAAATAGGGTTAGGGCGCGTCCTAGTCTAACCCGTTTATGAATATTT
Malus domestica genome assembly, chromosome: 15.
OU745005.1:36407854-36407877
GAGAGAGAGAGAGAGAGAGAGCAGAAGGTA36407854CCAGAAGTAAATAGGGTTAGGGCGCGTCCTAGTCTAACCCGTTTATGAATATTT
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:26400536-26400559
GAGAGAGAGAGAGAGGGGGAGCAGAAGGTA26400536CCAGAAGTAAATAGGGTTAGGGCGCGTCCTAGTCGAACCCGTTTATGAATAATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGCCCTAACCCTATTTACTTCTGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGCCCTAACCCTATTTACTTCTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.110 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=CGCCCTAACCCTATTTACTTCTGG&k=0&no_gap=0&offset=0&limit=50
0.127 | 0.017 | search_minus_done; http://172.18.8.135:50400/match?q=CCAGAAGTAAATAGGGTTAGGGCG&k=0&no_gap=0&offset=0&limit=48
0.132 | 0.005 | cgi_end;

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