GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 04:42:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2408195-2408214
ACACATACAACAAAGGAGCAGCCCAAAGCC2408195CGCCCTCTTCATAGCATAGTTTATTGAGTTTTCACTGATTTTCTCAGAAA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2362798-2362817
ACACATACAACAAAGGAGCAGCCCAAAGCC2362798CGCCCTCTTCATAGCATAGTTTATTGAGGTTTCACTGATTTTCTCAGAAA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2456927-2456946
ACACATACAACAAAGGAGCAGCCCAAAGCC2456927CGCCCTCTTCATAGCATAGTTTATTGAGGTTTCACTGATTTTCTCAGAAA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:2561199-2561218
ACACATACAACAAAGGAGCAGCCCAAAGCC2561199CGCCCTCTTCATAGCATAGTTTATTGAGTTTTCACTGATTTTCTCAGAAA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2349150-2349169
ACACATACAACAAAGGAGCAGCCCAAAGCC2349150CGCCCTCTTCATAGCATAGTTTATTGAGGTTTCACTGATTTTCTCAGAAA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2432895-2432914
ACACATACAACAAAGGAGCAGCCCAAAGCC2432895CGCCCTCTTCATAGCATAGTTTATTGAGTTTTCACTGATTTTCTCAGAAA
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2521815-2521834
ACACATACAACAAAGGAGCAGCCCAAAGCC2521815CGCCCTCTTCATAGCATAGTTTATTGAGGTTTCACTGATTTTCTCAGAAA
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2514398-2514417
ACACATACAACAAAGGAGCAGCCCAAAGCC2514398CGCCCTCTTCATAGCATAGTTTATTGAGGTTTCACTGATTTTCTCAGAAA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2571659-2571678
ACACATACAACAAAGGAGCAGCCCAAAGCC2571659CGCCCTCTTCATAGCATAGTTTATTGAGGTTTCACTGATTTTCTCAGAAA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2605714-2605733
ACACATACAACAAAGGAGCAGCCCAAAGCC2605714CGCCCTCTTCATAGCATAGTTTATTGAGGTTTCACTGATTTTCTCAGAAA
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2583645-2583664
ACACATACAACAAAGGAGCAGCCCAAAGCC2583645CGCCCTCTTCATAGCATAGTTTATTGAGGTTTCACTGATTTTCTCAGAAA
Thuidium tamariscinum genome assembly, chromosome: 3.
OX344751.1:18155098-18155117
CCGCCTCACGCTCTCTGCAGTTCCACTTTC18155098CGCCCTCTTCATAGCATAGTAAGATTTATGGCAGAAAAAAACGATTCTCA
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38733698-38733717
TTTCTGAGAAAATCAGTGAAAACTCAATAA38733698ACTATGCTATGAAGAGGGCGGGCTTTGGGCTGCTCCTTTGTTGTATGTGT
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:38558846-38558865
CTTCTGAGAAAATCAGTGAAAACTCAATGT38558846ACTATGCTATGAAGAGGGCGGGCTTTGGGCTGCTCCTTTGTTGTATGAGT
Philonthus cognatus genome assembly, chromosome: 1.
OW052241.1:86352103-86352122
GAAACTGTTTACAGAAGATCCAATATGCAG86352103ACTATGCTATGAAGAGGGCGAAGACGCCTCACATGTACTATTCGAGTGTG
Polymixis lichenea genome assembly, chromosome: 10.
OX420941.1:20517180-20517199
TTCCACACTATTTTCCACATATTAACAAAT20517180ACTATGCTATGAAGAGGGCGGTAAGCTAGTTATTTTCTTATTCAAGGAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGCCCTCTTCATAGCATAGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGCCCTCTTCATAGCATAGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.100 | 0.091 | search_plus_done; http://172.18.8.135:50400/match?q=CGCCCTCTTCATAGCATAGT&k=0&no_gap=0&offset=0&limit=50
0.123 | 0.023 | search_minus_done; http://172.18.8.135:50400/match?q=ACTATGCTATGAAGAGGGCG&k=0&no_gap=0&offset=0&limit=38
0.125 | 0.003 | cgi_end;

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