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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 12:43:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BR016516 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-109B09 5', mRNA sequence.
EX031872.1:633-652
TGAAAATCACCGGCTTAATCTGTTTCACAA633CGCCGAAGACTTTCTCTATCCCACC
Brassica napus genome assembly, chromosome: C07.
HG994371.1:36203001-36203020
TGAAAATCACCGGTTTAATCTGTTTCACAA36203001CGCCGAAGACTTTCTCTATCCCACCGGGACGGCCTAGGAGCTTGTGGAGC
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:38834877-38834896
TGAAAATCACCGGTTTAATCTGTTTCACAA38834877CGCCGAAGACTTTCTCTATCCCACCGGGACGGCCTAGGAGCTTGTGGAGC
Cerastis leucographa genome assembly, chromosome: 9.
OY720354.1:3872609-3872628
GGAGCAGCTCGTCAACAGCATCAAGCAAGT3872609CGCCGAAGACTTTCTCTATCATTGGAAAACTTTCCCCATTGGTGAGATCA
Sequence 1 from Patent WO0109356.
AX081276.1:1313-1332
GCTCCACAAGCTCCTAGGCCGTACCGGTGG1313GATAGAGAAAGTCTTCGGCGTTGTGAAACAGATTAAACCGGTGATTTTCA
Sequence 3 from Patent WO0109356.
AX081278.1:1313-1332
GCTCCACAAGCTCCTAGGCCGTACCGGTGG1313GATAGAGAAAGTCTTCGGCGTTGTGAAACAGATTAAACCGGTGATTTTCA
Sequence 1 from patent US 7645920.
GV627622.1:1313-1332
GCTCCACAAGCTCCTAGGCCGTACCGGTGG1313GATAGAGAAAGTCTTCGGCGTTGTGAAACAGATTAAACCGGTGATTTTCA
Sequence 3 from patent US 7645920.
GV627623.1:1313-1332
GCTCCACAAGCTCCTAGGCCGTACCGGTGG1313GATAGAGAAAGTCTTCGGCGTTGTGAAACAGATTAAACCGGTGATTTTCA
Brassica oleracea var. viridis mRNA, clone: KALE-110K19, 3' end sequence.
DK557452.1:13-32
CCGTCCCGGTGG13GATAGAGAAAGTCTTCGGCGTTGTGAAACAGATTAAACCGATGATTTTCA
OL2053R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL2053, mRNA sequence.
EH415852.1:260-279
GCTCCACAAGCTCCTAGGCCGTCCCGGTGG260GATAGAGAAAGTCTTCGGCGTTGTGACACAGATTAAACCGGTGATTTTTA
48RDOAM_UP_060_C01_03FEB2006_011 Brassica oleracea 48RDOAM Brassica oleracea cDNA 5', mRNA sequence.
ES943769.1:316-335
GCTCCACAAGCTCCTAGGCCGTCCCGGTGG316GATAGAGAAAGTCTTCGGCGTTGTGACACAGATTAAACCGGTGATTTTTA
RS1C981TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX888836.1:8-27
GCGGGGC8GATAGAGAAAGTCTTCGGCGTTGTGAAACAGATTAAACCGGTGATTTTCA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_5550.
FX694997.1:1463-1482
GCTTCACAAGCTCCTAGGCCGTACCGGTGG1463GATAGAGAAAGTCTTCGGCGTTGTGAAACAGATTAAGCCGGTGATTTTCA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_3766.
FX728284.1:1453-1472
GCTTCACAAGCTCCTAGGCCGTACCGGTGG1453GATAGAGAAAGTCTTCGGCGTTGTGAAACAGATTAAGCCGGTGATTTTCA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB051H12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189382.2:42160-42179
GCTTCACAAGCTCCTAGGCCGTACCGGTGG42160GATAGAGAAAGTCTTCGGCGTTGTGAAACAGATTAAGCCGGTGATTTTCA
Brassica rapa DELLA protein (RGA1) gene, complete cds.
AY928549.1:2412-2431
GCTTCACAAGCTTCTAGGCCGTACCGGTGG2412GATAGAGAAAGTCTTCGGCGTTGTGAAACAGATTAAACCGGTGATTTTCA
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:58093014-58093033
GCTTCACAAGCTCCTAGGCCGTACCGGTGG58093014GATAGAGAAAGTCTTCGGCGTTGTGAAACAGATTAAGCCGGTGATTTTCA
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:19730555-19730574
GCTCCACAAGCTCCTAGGCCGTCCCGGTGG19730555GATAGAGAAAGTCTTCGGCGTTGTGAAACAGATTAAACCGGTGATTTTCA
Brassica napus genome assembly, chromosome: A06.
HG994360.1:42818980-42818999
GCTCCACAAGCTCCTAGGCCGTACCGGTGG42818980GATAGAGAAAGTCTTCGGCGTTGTGAAACAGATTAAACCGGTGATTTTCA
Brassica rapa genome, scaffold: A06.
LR031569.1:52980602-52980621
GCTCCACAAGCTCCTAGGCCGTACCGGTGG52980602GATAGAGAAAGTCTTCGGCGTTGTGAAACAGATTAAACCGGTGATTTTCA
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:56610966-56610985
GCTCCACAAGCTCCTAGGCCGTACCGGTGG56610966GATAGAGAAAGTCTTCGGCGTTGTGAAACAGATTAAACCGGTGATTTTCA
Griposia aprilina genome assembly, chromosome: 7.
OU744290.1:20930266-20930285
TATTCTCACCAATAGGGAAAGTTTTCCAAT20930266GATAGAGAAAGTCTTCGGCGACTTGCTTGATGTTGTTGACGAGCTGCTCG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGCCGAAGACTTTCTCTATC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGCCGAAGACTTTCTCTATC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.258 | 0.248 | search_plus_done; http://172.18.8.135:50400/match?q=CGCCGAAGACTTTCTCTATC&k=0&no_gap=0&offset=0&limit=50
0.657 | 0.400 | search_minus_done; http://172.18.8.135:50400/match?q=GATAGAGAAAGTCTTCGGCG&k=0&no_gap=0&offset=0&limit=46
0.670 | 0.012 | cgi_end;

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