GGGenome | Results

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2025-04-12 08:19:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Dianthus caryophyllus mRNA, clone: CES04G14, 5' end sequence.
FY383759.1:560-580

AACCAGAAGAGAGAGGTTACTAGAGACACT560CGCCTTAAACAAACTATTCCGTAAAATATAATTTTTCGATCGATTTTTTAA

TSA: Dianthus caryophyllus mRNA, contig: CAK09.339.C1.
FX297143.1:559-579

AACCAGAAGAGAGAGGTTACTAGAGACACT559CGCCTTAAACAAACTATTCCGTAAAATATAATTTTTCGATCGATTTTTTAA

Dianthus caryophyllus mRNA, clone: CFES26E10, 5' end sequence.
FY403673.1:718-738

TTAAAAAATCGATCGAAAAATTATATTTTA718CGGAATAGTTTGTTTAAGGCGAGTGTGTCTAGTAACCTCTCTCTTCTATTT

TSA: Dianthus caryophyllus mRNA, contig: CAK09.339.C2.
FX297144.1:165-185

TTAAAAAATCGATCGAAAAATTATATTTTA165CGGAATAGTTTGTTTAAGGCGAGTGTGTCTAGTAACCTCTCTCTTCTATTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.279 | 0.270 | search_plus_done; http://172.18.8.135:50400/match?q=CGCCTTAAACAAACTATTCCG&k=0&no_gap=0&offset=0&limit=50
0.454 | 0.175 | search_minus_done; http://172.18.8.135:50400/match?q=CGGAATAGTTTGTTTAAGGCG&k=0&no_gap=0&offset=0&limit=48
0.456 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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