GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 22:45:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS2GA85JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD942528.1:530-551
CGAAATATTCACAAGCGCAAGAGCTTGATA530CGCTCTCATGAACCGATAATCTTTAAGATACAAATACTTCAACGCGTTGTCG
RR1H496JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD961400.1:214-235
CGATATATTCACAAGCGCAAGAGCTTGATA214CGCTCTCATGAACCGATAATCTTTAAGATACAAATACTTCAACGCGTTGTCG
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:11465518-11465539
CGAAATATTCACAAGCGCAAGAGCTTGATA11465518CGCTCTCATGAACCGATAATCTTTAAGATACAAATACTTCAACGCGTTGTCA
Brassica napus genome assembly, chromosome: A06.
HG994360.1:10168811-10168832
CGAAATATTCACAAGCGCAAGAGCTTGATA10168811CGCTCTCATGAACCGATAATCTTTAAGATACAAATACTTCAACGCGTTGTCA
Brassica rapa genome, scaffold: A06.
LR031569.1:9960381-9960402
CGAAATATTCACAAGCGCAAGAGCTTGATA9960381CGCTCTCATGAACCGATAATCTTTAAGATACAAATACTTCAACGCGTTGTCA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:45219131-45219152
CGAAATATTCACAAGCGCAAGAGCTTGATA45219131CGCTCTCATGAACCGATAATCTTTAAGATACAAATACTTCAACGCGTTGTCG
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:10800080-10800101
CGAAATATTCACAAGCGCAAGAGCTTGATA10800080CGCTCTCATGAACCGATAATCTTTAAGATACAAATACTTCAACGCGTTGTCA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:45219131-45219152
CGAAATATTCACAAGCGCAAGAGCTTGATA45219131CGCTCTCATGAACCGATAATCTTTAAGATACAAATACTTCAACGCGTTGTCG
RS2DV03TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY939421.1:406-427
CGACAACGCGTTGAAGTATTCGTATCTTAA406AGATTATCGGTTCATGAGAGCGTATCAAGCTCTTGCGCTTGTGAATATATCG
RS2GA85TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD946400.1:400-421
CGACAACGCGTTGAAGTATTTGTATCTTAA400AGATTATCGGTTCATGAGAGCGTATCAAGCTCTTGCGCTTGTGAATATTTCG
RR1H496TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD965739.1:405-426
CGACAACGCGTTGAAGTATTTGTATCTTAA405AGATTATCGGTTCATGAGAGCGTATCAAGCTCTTGCGCTTGTGAATATATCG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB062J16, complete sequence.
AC189417.2:119747-119768
TGACAACGCGTTGAAGTATTTGTATCTTAA119747AGATTATCGGTTCATGAGAGCGTATCAAGCTCTTGCGCTTGTGAATATTTCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGCTCTCATGAACCGATAATCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGCTCTCATGAACCGATAATCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.276 | 0.267 | search_plus_done; http://172.18.8.135:50400/match?q=CGCTCTCATGAACCGATAATCT&k=0&no_gap=0&offset=0&limit=50
0.547 | 0.271 | search_minus_done; http://172.18.8.135:50400/match?q=AGATTATCGGTTCATGAGAGCG&k=0&no_gap=0&offset=0&limit=42
0.550 | 0.003 | cgi_end;

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