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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 01:26:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BR087626 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-043F02 5', mRNA sequence.
EX101336.1:540-559
CTCATTCTTCTTATGAAAACTTGGCTCAGA540CGCTGGAGGAGATGTTCTTCGGAATGTCAGGTTCTACTACTTCTCGGGAA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_23054.
FX707226.1:536-555
CTCATTCTTCTTATGAAAACTTGGCTCAGA536CGCTGGAGGAGATGTTCTTCGGAATGTCAGGTTCTACTACTTCTCGGGAA
Brassica napus genome assembly, chromosome: A10.
HG994364.1:1498113-1498132
CTCATTCTTCTTATGAAAACTTGGCTCAGA1498113CGCTGGAGGAGATGTTCTTCGGAATGTCAGGTCAGTTACTGCTAAAACAC
Brassica rapa genome, scaffold: A10.
LR031577.1:1534639-1534658
CTCATTCTTCTTATGAAAACTTGGCTCAGA1534639CGCTGGAGGAGATGTTCTTCGGAATGTCAGGTCAGTTACTGCTTATACTT
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:1532816-1532835
CTCATTCTTCTTATGAAAACTTGGCTCAGA1532816CGCTGGAGGAGATGTTCTTCGGAATGTCAGGTCAGTTACTGCTTATACTT
Opitutales bacterium ASA1 DNA, complete genome.
AP028972.1:158118-158137
ATCTCGCCGTCTACCATGCGCTCAGTCTCG158118CGCTGGAGGAGATGTTCTTCGGAGCGGCAGGCGCGCCTCCGAACGTCGCG
Streptomyces sp. KN37 chromosome, complete genome.
CP139044.1:2853669-2853688
GCTTCTACGGCCTGCGCAAGGACCAGGACC2853669CGCTGGAGGAGATGTTCTTCGAGCCGTTCGGTCCGCCGCGGCCCGACGAC
Christensenella sp. Marseille-P3954 genome assembly, chromosome: contig00001.
LR026983.1:1413607-1413626
TCAACGACGCCTCCGATCCCAACGAGGCCT1413607CGCTGGAGGAGATGTTCTTCGAGATTACGGAAGGGGCTCACGCAAAATGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_59811.
FX759632.1:34-53
TTCCCGAGAAGTAGTAGAACCTGACATTCC34GAAGAACATCTCCTCCAGCGTCTGAGCCAAGTTTTCATAAGAAGAATGAG
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:25241209-25241228
GTGTTTTAGCAGTAACTGACCTGACATTCC25241209GAAGAACATCTCCTCCAGCGTCTGAGCCAAGTTTTCATAAGAAGAATGAG
Streptomyces sp. 135 chromosome, complete genome.
CP075691.1:5987024-5987043
GTCGTCGGGCCGCGGCGGACCGAACGGCTC5987024GAAGAACATCTCCTCCAGCGGGTCCTGGTCCTTGCGCAGGCCGTAGAAGC
Streptomyces huasconensis strain D23 chromosome, complete genome.
CP086119.1:5731539-5731558
CACGTCGGGCCGCGGCGGGCCGAACGGCTC5731539GAAGAACATCTCCTCCAGCGGGTCCTGGTCCTTGCGCAGGCCGTAGAAGG
Streptomyces sp. JCM 35825 chromosome, complete genome.
CP116806.1:5724964-5724983
CACGTCGGGCCGCGGCGGGCCGAACGGCTC5724964GAAGAACATCTCCTCCAGCGGGTCCTGGTCCTTGCGCAGGCCGTAGAAGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGCTGGAGGAGATGTTCTTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGCTGGAGGAGATGTTCTTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.378 | 0.370 | search_plus_done; http://172.18.8.135:50400/match?q=CGCTGGAGGAGATGTTCTTC&k=0&no_gap=0&offset=0&limit=50
0.478 | 0.099 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGAACATCTCCTCCAGCG&k=0&no_gap=0&offset=0&limit=42
0.481 | 0.003 | cgi_end;

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