GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:34:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Solanum melongena mRNA, clone: CAL02C14, 5'end, expressed in callus at 3d after subculture.
FS008654.1:163-183
AAGCAGGGCCTCACGAAGTGCTCAGCTGCG163CGGAACAAAAAGCTTTCAACCCAACCGCTGCTCCTGCTGCTGCTTCTTGAG
Solanum melongena mRNA, clone: PER02O12, 5'end, expressed in pericarp at 10d after anthesis.
FS038767.1:50-70
AAGCAGGGCCTCACGAAGTGCTCAGCTGCG50CGGAACAAAAAGCTTTCAACCCAACCGCTGCTCCTGCTGCTGCTTCTTGAG
Solanum melongena mRNA, clone: SEP02A10, 5'end, expressed in sepal at 10d after anthesis.
FS058819.1:342-362
AAGCAGGGCCTCACGAAGTGCTCAGCTGCG342CGGAACAAAAAGCTTTCAACCCAACCGCTGCTCCTGCTGCTGCTTCTTGAG
Solanum melongena mRNA, clone: SEP03F12, 5'end, expressed in sepal at 10d after anthesis.
FS059664.1:167-187
AAGCAGGGCCTCACGAAGTGCTCAGCTGCG167CGGAACAAAAAGCTTTCAACCCAACCGCTGCTCCTGCTGCTGCTTCTTGAG
Solanum melongena mRNA, clone: SEP05M14, 5'end, expressed in sepal at 10d after anthesis.
FS061248.1:135-155
AAGCAGGGCCTCACGAAGTGCTCAGCTGCG135CGGAACAAAAAGCTTTCAACCCAACCGCTGCTCCTGCTGCTGCTTCTTGAG
Solanum torvum mRNA, clone: TVR11M05, 5'end, expressed in root at vegetative stage, 2 months after germination.
FS111146.1:403-423
AAGCAGGGCCTCACGAAGTGCTCAGCTGCG403CGGAACAAAAAGCTTTCAACCCAACCGCAGCCCCTGCTGCTGCTTCTTGAG
Sm30PPL01G03 Library from 30 dpa fruit of eggplant cv. PPL Solanum melongena cDNA, mRNA sequence.
JZ717015.1:149-169
AAGCAGGGCCTCACGAAGTGCTCAGCTGCG149CGGAACAAAAAGCTTTCAACCCAACCGCTGCTCCTGCTGCTGCTTCTTGAG
Sm50PPL04A03 Library from 50 dpa fruit of eggplant cv. PPL Solanum melongena cDNA, mRNA sequence.
JZ717418.1:149-169
AAGCAGGGCCTCACGAAGTGCCCAGCTGCG149CGGAACAAAAAGCTTTCAACCCAACCGCTGCTCCTGCTGCTGCTTCTTGAG
TSA: Beta vulgaris Locus_827_Transcript_2/10_Confidence_0.441_Length_2100 mRNA sequence.
JP485382.1:1057-1077
AAGCAGGCCCCAGTGAAACCCTCACTTGTG1057CGGAACAAAAAGCTTTCAACCCTTCCAATCCTGGGAGCTCCTCCTCTTAAG
TSA: Beta vulgaris Locus_827_Transcript_4/10_Confidence_0.132_Length_614 mRNA sequence.
JP485383.1:434-454
AAGCAGGCCCCAGTGAAACCCTCACTTGTG434CGGAACAAAAAGCTTTCAACCCTTCCAATCCTGGGAGCTCCTCCTCTTAAG
TSA: Beta vulgaris Locus_827_Transcript_7/10_Confidence_0.574_Length_2723 mRNA sequence.
JP485384.1:1057-1077
AAGCAGGCCCCAGTGAAACCCTCACTTGTG1057CGGAACAAAAAGCTTTCAACCCTTCCAATCCTGGGAGCTCCTCCTCTTAAG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 5.
OX392551.1:35351239-35351259
AAGCAGGCTCCAGTGAAACCCTCACTTGTG35351239CGGAACAAAAAGCTTTCAACCCTTCCAATCCTGGGAGCTCCTCCTCTTAAG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 5.
OX392560.1:33511361-33511381
AAGCAGGCCCCAGTGAAACCCTCACTTGTG33511361CGGAACAAAAAGCTTTCAACCCTTCCAATCCTGGGAGCTCCTCCTCTTAAG
DQ172879 Beta vulgaris roots cotyledon to first true leaf stage Beta vulgaris cDNA clone BvNH2D5, mRNA sequence.
DQ172879.1:88-108
CTTAAGAGGAGGAGCTCCCAGGATTGGAAG88GGTTGAAAGCTTTTTGTTCCGCACAAGTGAGGGTTTCACTGGGGCCTGCTT
Solanum melongena mRNA, clone: AE003D03, 3'end, expressed in ovary at anthesis.
FS001249.1:285-305
CTCAAGAAGCAGCAGTAGGAGCAGCGGTTG285GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: AE004D19, 3'end, expressed in ovary at anthesis.
FS001923.1:145-165
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG145GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: AE505C22, 3'end, expressed in ovary at 5d post-anthesis.
FS006412.1:255-275
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG255GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: CAL02C14, 3'end, expressed in callus at 3d after subculture.
FS008655.1:271-291
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG271GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: CAL06F06, 3'end, expressed in callus at 3d after subculture.
FS010984.1:255-275
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG255GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: CHX01D09, 3'end, expressed in ovary at 24h after anthesis.
FS011460.1:140-160
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG140GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: LS001M12, 3'end, expressed in ovary at anthesis.
FS018200.1:285-305
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG285GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGACCCTGCTT
Solanum melongena mRNA, clone: MLF03C11, 3'end, expressed in leaf at fully expanded leaf.
FS023990.1:280-300
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG280GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: OVS01P02, 3'end, expressed in ovary at 5d pre-anthesis.
FS030105.1:287-307
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG287GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: OVS06F16, 3'end, expressed in ovary at 5d pre-anthesis.
FS032849.1:309-329
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG309GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PED02G18, 3'end, expressed in peduncle at anthesis.
FS034063.1:282-302
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG282GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PED04B13, 3'end, expressed in peduncle at anthesis.
FS035159.1:309-329
CTCAAGAAACAGCAGCAGGAGCAGCGGTTG309GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PED04G14, 3'end, expressed in peduncle at anthesis.
FS035366.1:141-161
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG141GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PED05I08, 3'end, expressed in peduncle at anthesis.
FS036064.1:285-305
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG285GGTTGAAAGCTTTTTGTTCCGTGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PED07H01, 3'end, expressed in peduncle at anthesis.
FS037270.1:238-258
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG238GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PER02F01, 3'end, expressed in pericarp at 10d after anthesis.
FS038426.1:248-268
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG248GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PER03E21, 3'end, expressed in pericarp at 10d after anthesis.
FS039015.1:311-331
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG311GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PER04C12, 3'end, expressed in pericarp at 10d after anthesis.
FS039560.1:255-275
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG255GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PER05G18, 3'end, expressed in pericarp at 10d after anthesis.
FS040308.1:298-318
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG298GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PER05M16, 3'end, expressed in pericarp at 10d after anthesis.
FS040510.1:166-186
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG166GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PER06F07, 3'end, expressed in pericarp at 10d after anthesis.
FS040807.1:291-311
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG291GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PER08B20, 3'end, expressed in pericarp at 10d after anthesis.
FS041956.1:255-275
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG255GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PLA01G10, 3'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS042785.1:305-325
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG305GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PLA01H02, 3'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS042814.1:307-327
CTCAAGAAGCAGCAGCAGGGGCAGCGGTTG307GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PLA04C15, 3'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS044619.1:249-269
CTCAAGGAGCAGCAGCAGGAGCAGCGGTTG249GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PLA05I02, 3'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS045508.1:299-319
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG299GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: PLA07O16, 3'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS047074.1:286-306
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG286GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: RBW07C20, 3'end, expressed in root at 3w after germination.
FS052685.1:289-309
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG289GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SEP02A10, 3'end, expressed in sepal at 10d after anthesis.
FS058820.1:313-333
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG313GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SEP03F12, 3'end, expressed in sepal at 10d after anthesis.
FS059665.1:244-264
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG244GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SEP04E22, 3'end, expressed in sepal at 10d after anthesis.
FS060289.1:150-170
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG150GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SEP05B02, 3'end, expressed in sepal at 10d after anthesis.
FS060784.1:137-157
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG137GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAACACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SEP05B04, 3'end, expressed in sepal at 10d after anthesis.
FS060786.1:285-305
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG285GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SEP05M14, 3'end, expressed in sepal at 10d after anthesis.
FS061249.1:285-305
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG285GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SEP05N01, 3'end, expressed in sepal at 10d after anthesis.
FS061268.1:285-305
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG285GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAGCACTTCGTGAGGCCCTGCTT
Solanum melongena mRNA, clone: SEP08C13, 3'end, expressed in sepal at 10d after anthesis.
FS062670.1:286-306
CTCAAGAAGCAGCAGCAGGAGCAGCGGTTG286GGTTGAAAGCTTTTTGTTCCGCGCAGCTGAACACTTCGTGAGGCCCTGCTT
TSA: Beta vulgaris Locus_827_Transcript_1/10_Confidence_0.059_Length_338 mRNA sequence.
JP485381.1:133-153
CTTAAGAGGAGGAGCTCCCAGGATTGGAAG133GGTTGAAAGCTTTTTGTTCCGCACAAGTGAGGGTTTCACTGGGGCCTGCTT
TSA: Beta vulgaris Locus_827_Transcript_2/10_Confidence_0.441_Length_2100 mRNA sequence.
JP485382.1:1647-1667
CTTAAGAGGAGGAGCTCCCAGGATTGGAAG1647GGTTGAAAGCTTTTTGTTCCGCACAAGTGAGGGTTTCACTGGGGCCTGCTT
TSA: Beta vulgaris Locus_827_Transcript_7/10_Confidence_0.574_Length_2723 mRNA sequence.
JP485384.1:1647-1667
CTTAAGAGGAGGAGCTCCCAGGATTGGAAG1647GGTTGAAAGCTTTTTGTTCCGCACAAGTGAGGGTTTCACTGGGGCCTGCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGGAACAAAAAGCTTTCAACC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGGAACAAAAAGCTTTCAACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.903 | 0.895 | search_plus_done; http://172.18.8.135:50400/match?q=CGGAACAAAAAGCTTTCAACC&k=0&no_gap=0&offset=0&limit=50
4.316 | 3.412 | search_minus_done; http://172.18.8.135:50400/match?q=GGTTGAAAGCTTTTTGTTCCG&k=0&no_gap=0&offset=0&limit=37
4.343 | 0.027 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).