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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 15:28:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

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Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

H07_P8_060 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EX164973.1:106-125
TTTTTTTTTTTTTTAACAGATAAATCATAA106CGGAAGCATTTTATTCAAAGAATCAACTTCATTACAATAAATTTAACGAA
BC_005_82 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA sequence.
EY197590.1:106-125
TTTTTTTTTTTTTTAACAGATAAATCATAA106CGGAAGCATTTTATTCAAAGAATCAACTTCATTACAATAAATTTAACGAA
rmhcyd0_001083.y1.scf cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO105261.1:78-97
TTCACGTTGCAAAAAACAGATAAATCATAA78CGGAAGCATTTTATTCAAAGAATCAACTTCATTACAATAAATTTAACGAA
rcrycc0_0042_H02.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO109737.1:13-32
CTTAAATCATAA13CGGAAGCATTTTATTCAAAGAATCAACTTCATTACAATAAATTTAACGAA
rcrycc0_0063_E05.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO111491.1:10-29
AAATCATAA10CGGAAGCATTTTATTCAAAGAATCAACTTCATTACAATAAATTTAACGAA
rcrycc0_0063_E11.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO111497.1:16-35
TTTTTTAAATCATAA16CGGAAGCATTTTATTCAAAGAATCAACTTCATTACAATAAATTTAACGAA
Rattus norvegicus clone CH230-35P7, WORKING DRAFT SEQUENCE, 4 unordered pieces.
AC130084.4:51687-51706
GATAGGAGTTTGGTTCAGGTGAGTATATGC51687CGGAAGCATTTTATTCAAAGACTTTGTCTTTAAATCAGTGTTAGTACTTA
Gossypium raimondii clone GR__Ba0096K16-hvi, complete sequence.
AC243119.1:9517-9536
TTCACGTTGCAAAAAACAGATAAATCATAA9517CGGAAGCATTTTATTCAAAGAATCAACTTCATTACAATAAATTTAACGAA
Gossypioides kirkii chromosome KI_01.
CP032244.1:15628748-15628767
TTCAACCACAAAAAAGAGATAAAAACATAA15628748CGGAAGCATTTTATTCAAAGAATCAACTTCATTACAATAAATTTAACCAA
Gossypioides kirkii chromosome KI_01.
CP032244.1:15694542-15694561
CGAAAAAAAATCACTAATAATAAATCACAG15694542CGGAAGCATTTTATTCAAAGAATCAACTTCATTACAATAATCAAATGAAG
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:26651281-26651300
TTCACGTTGCAAAAAACAGATAAATCATAA26651281CGGAAGCATTTTATTCAAAGAATCAACTTCATTACAATAAATTTAACGAA
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:71865725-71865744
CCTTGCAAAAAATAAAAAGATAAATCATAA71865725CGGAAGCATTTTATTCAAAGAATCAACTTCATTACAATAAATTTAACGAA
Quercus dentata isolate Qdleaves-2020 chromosome 9.
CP116452.1:23993969-23993988
CCATTATTTTTATTTCTTTTGAGAGTAAAA23993969CGGAAGCATTTTATTCAAAGAAAGAATAAGTTTATACAAAAGCAAGGTAG
Quercus robur genome assembly, chromosome: 9.
OW028772.1:17913823-17913842
CATTTATTTTTATTTCTTTTGAGAGTAAAA17913823CGGAAGCATTTTATTCAAAGAAAGAATAAGTTTATACAAAAGCAAGGTAG
Argiope bruennichi genome assembly, chromosome: 4.
OX387442.1:13439291-13439310
AGGAACGGAAAGCACGAAGAGAATCTAGGA13439291CGGAAGCATTTTATTCAAAGTGCAAATAACAGTTTCATGCATAAAAAAAG
Sequence 20407 from patent US 7557201.
GP489410.1:184-203
TTCGTTAAATTTATTGTAATGAAGTTGATT184CTTTGAATAAAATGCTTCCGTTATGATTTAAAACAAACAAAAACTAACAT
GR__Eb0034D12.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0034D12 3', mRNA sequence.
CO104523.1:307-326
TTCGTTAAATTTATTGTAATGAAGTTGATT307CTTTGAATAAAATGCTTCCGTTATGATTT
GH_TMIRS_025_D10_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW498388.1:382-401
TTCGTTAAATTTATTGTAATGAAGTTGATT382CTTTGAATAAAATGCTTCCGTTATGATTT
GH_TMIRS_075_C04_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW503530.1:382-401
TTCGTTAAATTTATTGTAATGAAGTTGATT382CTTTGAATAAAATGCTTCCGTTATGATTTCGCGGGGCAATGTCCCGTAA
D08-GC8996 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810747.1:384-403
TTCGTTAAATTTATTGTAATGAAGTTGATT384CTTTGAATAAAATGCTTCCGTTATGATTT
E03-GC11069 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK810752.1:384-403
TTCGTTAAATTTATTGTAATGAAGTTGATT384CTTTGAATAAAATGCTTCCGTTATGATT
Gossypioides kirkii clone GKH013G22-jmc, complete sequence.
AC243086.1:41291-41310
TTGGTTAAATTTATTGTAATGAAGTTGATT41291CTTTGAATAAAATGCTTCCGTTATGTTTTTATCTCTTTTTTGTGGTTGAA
Gossypium hirsutum clone MX100D19-jmf, complete sequence.
AC243152.1:92005-92024
TTCGTTAAATTTATTGTAATGAAGTTGATT92005CTTTGAATAAAATGCTTCCGTTATGATTTATCTGTTTTTTGCAACGTGAA
Lotus japonicus B-129 DNA, chromosome 1, complete sequence.
AP022629.1:68966034-68966053
AGTCTCAAAGCTTCAATAAAGGAAATAAAT68966034CTTTGAATAAAATGCTTCCGCACTTTCCTCATAAAACATATAATTGCCAC
Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:33227571-33227590
TTCGTTAAATTTATTGTAATGAAGTTGATT33227571CTTTGAATAAAATGCTTCCGTTATGATTTATCTTTGTTTTGCAACGTGAA
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:53833913-53833932
TTCGTTAAATTTATTGTAATGAAGTTGATT53833913CTTTGAATAAAATGCTTCCGTTATGATTTATCTTTTTTATTTTTTTGCAA
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:55718236-55718255
TTCGTTAAATTTATTGTAATGAAGTTGATT55718236CTTTGAATAAAATGCTTCCGTTATGATTTATCTTTTTTTATTTTTTGCAA
Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:124416922-124416941
TTCGTTAAATTTATTGTAATGAAGTTGATT124416922CTTTGAATAAAATGCTTCCGTTATGATTTATCTTTTTTATTTTTTGCAAG
Oscheius sp. DF5120 genome assembly, chromosome: IV.
OW051464.1:1068729-1068748
CTGATCCTCGATTCATCGCGGCGTTTTGAG1068729CTTTGAATAAAATGCTTCCGAAGTGTTCCACCTCTCGATCCAGCTCGATA
Nephrocerus scutellatus genome assembly, chromosome: 1.
OX352761.1:136372692-136372711
ATTACTACCGACTGATTGGAAGTACTAACG136372692CTTTGAATAAAATGCTTCCGAATATAGTTGTTTGTCATAGAGGCTCACCA
Erebia epiphron genome assembly, chromosome: 14.
OZ009959.1:4737745-4737764
TCAATTTAAAACATCGCTAGGGCTAACTTT4737745CTTTGAATAAAATGCTTCCGCATAGCACTTTAAAACATAAAATAACAGTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGGAAGCATTTTATTCAAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGGAAGCATTTTATTCAAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.768 | 0.760 | search_plus_done; http://172.18.8.135:50400/match?q=CGGAAGCATTTTATTCAAAG&k=0&no_gap=0&offset=0&limit=50
1.254 | 0.486 | search_minus_done; http://172.18.8.135:50400/match?q=CTTTGAATAAAATGCTTCCG&k=0&no_gap=0&offset=0&limit=35
1.265 | 0.011 | cgi_end;

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