GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 04:43:10, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 19.
CP151914.1:6202754-6202773
AGAGTAGCGTAATGAGCCTCAAAGCTTACT6202754CGGAATGAAAGCCCATTAGATAAGAAATGAAATCTGAAAATGTTAAAGTG
Brassica napus genome assembly, chromosome: C09.
HG994373.1:6784578-6784597
AGAGTAGCGTAATGAGCCTCAAAGCTTACT6784578CGGAATGAAAGCCCATTAGATAAGAAATGAAATCTGAAAATGTTAAAGTG
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:6863557-6863576
AGAGTTGCGTAATGGGCCTCAAAGCTTACT6863557CGGAATGAAAGCCCATTAGATAAGAAATGAAATCTGAAAATGTTTAAGTG
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:62348454-62348473
CACTTTAACATTTTCAGATTTCATTTCTTA62348454TCTAATGGGCTTTCATTCCGAGTAAGCTTTGAGGCTCATTACGCTACTCT
Salix babylonica isolate Saba01F chromosome 3Bb.
CP161349.1:10381723-10381742
CCTCATTCCAAGAAAATGAGGTTAGGTGAA10381723TCTAATGGGCTTTCATTCCGAGGGGATTTTCAACATTCTTATTTGTTTCT
Salix babylonica isolate Saba01F chromosome 3Ba.
CP161387.1:11287385-11287404
CCTCATTCCAAGAAAATGAGGTTAGGTGAA11287385TCTAATGGGCTTTCATTCCGAGGGGATTTTCAACATTCTTATTTGTTTCT
Salix caprea genome assembly, chromosome: 17.
OZ037759.1:8859326-8859345
CTCATTCCAAGAAAATTAGGCCAAGGTGAA8859326TCTAATGGGCTTTCATTCCGAGGGGATTTTCAACATTCTTATTTGTTTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGGAATGAAAGCCCATTAGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGGAATGAAAGCCCATTAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.237 | 0.228 | search_plus_done; http://172.18.8.135:50800/match?q=CGGAATGAAAGCCCATTAGA&k=0&no_gap=0&offset=0&limit=50
0.320 | 0.083 | search_minus_done; http://172.18.8.135:50800/match?q=TCTAATGGGCTTTCATTCCG&k=0&no_gap=0&offset=0&limit=47
0.323 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).