GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 18:03:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:5656172-5656191
AAGCTTACCTCTCCGGTGAGGTCCGGCGAT5656172CGGAGTCAGTTGGATATCGGAGAACGGCGAAATAGTTATAAGCGTTGGGA
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:6130507-6130526
AAGCTTACCTCTCCGGTGAGGTCCGGCGAT6130507CGGAGTCAGTTGGATATCGGAGAACGGCGAAATGGTTATAAGCGTTGGGA
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:5919530-5919549
AAGCTTACCTCTCCGGTGAGGTCCGGCGAT5919530CGGAGTCAGTTGGATATCGGAGAACGGCGAAATGGTTATAAGCGTTGGGA
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141985.1:6524719-6524738
AAGCTTACCTCTCCGGTGAGGTCCGGCGAT6524719CGGAGTCAGTTGGATATCGGAGAACGGCGAAATGGTTATAAGCGTTGGGA
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:6241300-6241319
AAGCTTACCTCTCCGGTGAGGTCCGGCGAT6241300CGGAGTCAGTTGGATATCGGAGAACGGCGAAATGGTTATAAGCGTTGGGA
Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:5881697-5881716
AAGCTTACCTCTCCGGTGAGGTCCGGCGAT5881697CGGAGTCAGTTGGATATCGGAGAACGGCGAAATGGTTATAAGCGTTGGGA
Malus domestica genome assembly, chromosome: 16.
OU696692.1:6245354-6245373
AAGCTTACCTCTCCGGTGAGGTCCGGCGAT6245354CGGAGTCAGTTGGATATCGGAGAACGGCGAAATGGTTATAAGCGTTGGGA
Malus domestica genome assembly, chromosome: 16.
OU744557.1:6316581-6316600
AAGCTTACCTCTCCGGTGAGGTCCGGCGAT6316581CGGAGTCAGTTGGATATCGGAGAACGGCGAAATGGTTATAAGCGTTGGGA
Malus domestica genome assembly, chromosome: 16.
OU744968.1:6225789-6225808
AAGCTTACCTCTCCGGTGAGGTCCGGCGAT6225789CGGAGTCAGTTGGATATCGGAGAACGGCGAAATGGTTATAAGCGTTGGGA
Malus domestica genome assembly, chromosome: 16.
OU745006.1:6258767-6258786
AAGCTTACCTCTCCGGTGAGGTCCGGCGAT6258767CGGAGTCAGTTGGATATCGGAGAACGGCGAAATGGTTATAAGCGTTGGGA
Malus x robusta genome assembly, chromosome: 3.
OY720327.1:6593535-6593554
AAGCTTACCTCTCCGGTGAGGTCCGGCGAT6593535CGGAGTCAGTTGGATATCGGAGAACGGCGAAATGGTTATAAGCGTTGGGA
Crataegus laevigata genome assembly, chromosome: 11.
OY756948.1:6486045-6486064
AACCTTACCTCTCCGGTGAGGTCCGGCGAT6486045CGGAGTCAGTTGGATATCGGAGAACGGCGAAATGGTTATAAGCGTAGGGA
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:5136347-5136366
AAGCTTACCTCTCCGGTGAGGTCCGGCGAT5136347CGGAGTCAGTTGGATATCGGAGAACGGCGAAATGGTTATAAGCGTTGGGA
TSA: Pyrus pyrifolia mRNA, contig: contig_34581.
FX433855.1:87-106
CTCCAACGCTTATAACCATTTCGCCGTTCT87CCGATATCCAACTGACTCCGATCGCCGGACCTCACCGGAGAGGTTTTGGA
TSA: Pyrus x bretschneideri Unigene1455_XinShao mRNA sequence.
JR596824.1:113-132
CTCCAACGCTTATAACCATTTCGCCGTTCT113CCGATATCCAACTGACTCCGATCGCCGGACCTCACCGGAGAGGTTTTGGA
Pyrus pyrifolia microsatellite TXY121 sequence.
KC770041.1:152-171
CTCCAACGCTTATAACCATTTCGCCGTTCT152CCGATATCCAACTGACTCCGATCGCCGGACCTCACCGGAGAGGTTTTGGA
Leistus spinibarbis genome assembly, chromosome: 14.
OW121805.1:2637810-2637829
CGATTTGACCATTTCTGAATCTAATCTTGG2637810CCGATATCCAACTGACTCCGTTTGACTGTAAGAATGTATAATTTAGGATT
Microchrysa polita genome assembly, chromosome: 1.
OX454415.1:125446255-125446274
TTAATAGATTTCTTGCAAAATGTACTTGTG125446255CCGATATCCAACTGACTCCGTGCCCGTATCCAATTGCAATGAGTTGTTTT
Microchrysa polita genome assembly, chromosome: 6.
OX454420.1:58605149-58605168
AGTATAGATTTCTTGTAAAATGTACTTGTC58605149CCGATATCCAACTGACTCCGGTTTTTCATGGATACTGGCATTAAAAAATG
Microchrysa polita genome assembly, chromosome: 7.
OX454421.1:23627385-23627404
TTAGTAGATTTCTTGTAAAATGTACTTGTG23627385CCGATATCCAACTGACTCCGGTTTTTCATGGATACTAGCATAAAAAAAAT
Chymomyza fuscimana genome assembly, chromosome: 2.
OX465089.1:30898050-30898069
GAGTTAATATTTTCATCAATAGGGAAGGTG30898050CCGATATCCAACTGACTCCGGGAAATGCGATGGACATTTCTACAGTGGCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGGAGTCAGTTGGATATCGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGGAGTCAGTTGGATATCGG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.110 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=CGGAGTCAGTTGGATATCGG&k=0&no_gap=0&offset=0&limit=50
0.168 | 0.058 | search_minus_done; http://172.18.8.135:50400/match?q=CCGATATCCAACTGACTCCG&k=0&no_gap=0&offset=0&limit=37
0.173 | 0.005 | cgi_end;

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