GGGenome | Results

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2025-04-08 18:10:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Daucus carota subsp. sativus cultivar DH1 chromosome 4.
CP093346.1:44719460-44719482

GGTGGGTTGTTAAGCAACTTGTAATAGTTA44719460CGGATATTGGACTTGAATCTGGGGACATAAACCTCGTCATTTTCAAGGGACTG

Daucus carota isolate Kuroda chromosome 4.
CP125304.1:33009325-33009347

GGTGGGTTGTTAAGCAACTTGTAATAGTTA33009325CGGATATTGGACTTGAATCTGGGGACATAAACCTCGTCATTTTCAAGGGACTG

KYERRC001_05-A07-T3.ab1 Panax ginseng in vitro-cultured adventitious root cDNA library Panax ginseng cDNA, mRNA sequence.
HS076411.1:773-795

CCAATCCCTTGAAAATGATGAGGTTTATGT773CCCAGATTCAAGTCCAATATCCGAAACTATTACAAAATCCTCGATAACCCACC

Daucus carota subsp. sativus cultivar DH1 chromosome 4.
CP093346.1:44689064-44689086

CAGTCCCTTGAAAATGACGAGGTTTATGTC44689064CCCAGATTCAAGTCCAATATCCGTAACTATTACAAGTTGCTTAACAACCCACC

Daucus carota isolate Kuroda chromosome 4.
CP125304.1:32978058-32978080

CAGTCCCTTGAAAATGACGAGGTTTATGTC32978058CCCAGATTCAAGTCCAATATCCGTAACTATTACAAGTTGCTTAACAACCCACC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.104 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=CGGATATTGGACTTGAATCTGGG&k=0&no_gap=0&offset=0&limit=50
0.220 | 0.116 | search_minus_done; http://172.18.8.135:50400/match?q=CCCAGATTCAAGTCCAATATCCG&k=0&no_gap=0&offset=0&limit=48
0.222 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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