GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:11:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086G22, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189497.2:1164-1183
ATAATGTGGAGAAACCTATCAGTGAGTTGC1164CGGCAAAGGATGTCAAGCAAATCTTGCAATCTCCTATGAAGTCTCCTCAG
Genomic sequence for broccoli [Brassica oleracea L. (Italica group)] BAC clone B19N3, complete sequence.
AC149635.1:96176-96195
TACCCGTGGTAAAAGTCATCAGTGAGTTGC96176CGGCAAAGGATGTCAAGCAAATTTTGCAATCTCCTATGAAGTCTCCTCAG
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:2730140-2730159
TACCCGTGGTAAAAGTCATCAGTGAGTTGC2730140CGGCAAAGGATGTCAAGCAAATTTTGCAATCTCCTATGAAGTCTCCTCAG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_6119.
FX692647.1:1064-1083
CTGAGGAGACTTCATAGGAGATTGCAAGAT1064TTGCTTGACATCCTTTGCCGGCAACTCACTGATAGGTTTCTCCACATTAT
BONAC73TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONAC73, genomic survey sequence.
BZ429338.1:498-517
CTGAGGAGACTTCATAGGAGATTGCAAAAT498TTGCTTGACATCCTTTGCCGGCAACTCACTGATGACTTTTACCACGGGTA
BOKBD15TF BO_10_15_KB_nuc Brassica oleracea genomic clone BOKBD15, genomic survey sequence.
BZ523123.1:335-354
CTGAGGAGACTTCATAGGAGATTGCAAAAT335TTGCTTGACATCCTTTGCCGGCAACTCACTGATGACTTTTACCACGGGTA
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:36979886-36979905
CTGAGGAGACTTCATAGGAGATCGCAAGAT36979886TTGCTTGACATCCTTTGCCGGTAACTCACTGATGACTTTAACCACGGGTA
Brassica napus genome assembly, chromosome: A02.
HG994356.1:31497612-31497631
CTGAGGAGACTTCATAGGAGATTGCAAAAT31497612TTGCTTGACATCCTTTGCCGGCAACTCACTGATGACTTTTACCACGGGTA
Brassica napus genome assembly, chromosome: C02.
HG994366.1:59577955-59577974
CTGAGGAGACTTCATAGGAGATTGCAAAAT59577955TTGCTTGACATCCTTTGCCGGCAACTCACTGATGACTTTTACCACGGGTA
Brassica rapa genome, scaffold: A02.
LR031573.1:29688683-29688702
CTGAGGAGACTTCATAGGAGATTGCAAGAT29688683TTGCTTGACATCCTTTGCCGGCAACTCACTGATAGGTTTCTCCACATTAT
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:30620268-30620287
CTGAGGAGACTTCATAGGAGATTGCAAGAT30620268TTGCTTGACATCCTTTGCCGGCAACTCACTGATAGGTTTCTCCACATTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGGCAAAGGATGTCAAGCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGGCAAAGGATGTCAAGCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.096 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=CGGCAAAGGATGTCAAGCAA&k=0&no_gap=0&offset=0&limit=50
0.145 | 0.049 | search_minus_done; http://172.18.8.135:50400/match?q=TTGCTTGACATCCTTTGCCG&k=0&no_gap=0&offset=0&limit=47
0.150 | 0.005 | cgi_end;

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