GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 13:24:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

CGN-27245 Leaf Coffea canephora cDNA clone cccl5e10 5', mRNA sequence.
DV685797.1:375-397
AACTTGTGTCGACTTTTGTCTGCTAATCTT375GTATAGGCTGCCATTTCTTCCCGTCGCACTCCCTTGATGTTTTTCTTTCCCTC
CGN-29952 Leaf Coffea canephora cDNA clone cccl5e9 5', mRNA sequence.
DV687818.1:375-397
AACTTGTGTCGACTTTTGTCTGCTAATCTT375GTATAGGCTGCCATTTCTTCCCGTCGCACTCCCTTGATGTTTTTCTTTCCCTC
TransId-236093 CAET42MIX Coffea arabica cDNA clone CAET42MIX-CFEXE38TV similar to At5g58760 - Arabidopsis thaliana (Mouse-ear cress), mRNA sequence.
GT007769.1:560-582
AACTTGTGTCGACTTTTGTCTGCTAATCTT560GTATAGGCTGCCATTTCTTCCCGTCGCACTCCCTTGATGTTTTTCTTTCCCTC
CR00-XX-FR4-054-C04-SB.F Coffea racemosa FR4 Coffea racemosa cDNA clone CR00-XX-FR4-054-C04-SB, mRNA sequence.
GT658790.1:605-627
AACTTGTGTCGACTTTTGTCTGCTAATCTT605GTATAGGCTGCCATTTCTTCCCGTCGCACTCCTTTTGATGTTTTTCTTTCCCT
CA00-XX-RX1-010-G08-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-010-G08-EB, mRNA sequence.
GT729650.1:127-149
AACTTGTGTCGACTTTTGTCTGCTAATCTT127GTATAGGCTGCCATTTCTTCCCGTCGCACTCCCTTGATGTTTTTCTTTCCCTC
CA00-XX-RX1-011-A08-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-011-A08-EB, mRNA sequence.
GT729651.1:127-149
AACTTGTGTCGACTTTTGTCTGCTAATCTT127GTATAGGCTGCCATTTCTTCCCGTCGCACTCCCTTGATGTTTTTCTTTCCCTC
CA00-XX-RX1-036-E07-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-036-E07-EB, mRNA sequence.
GT729652.1:331-353
AACTTGTGTCGACTTTTGTCTGCTAATCTT331GTATAGGCTGCCATTTCTTCCCGTCGCACTCCCTTGATGTTTTTCTTTCCCTC
CA00-XX-CB1-106-G05-RF.F Coffea arabica CB1 Coffea arabica cDNA clone CA00-XX-CB1-106-G05-RF, mRNA sequence.
GT732969.1:290-312
AACTTGTGTCGACTTTTGTCTGCTAATCTT290GTATAGGCTGCCATTTCTTCCCGTCGCACTCCCTTGATGTTTTTCTTTCCCTC
CA00-XX-CS1-091-B11-AB.F Coffea arabica CS1 Coffea arabica cDNA clone CA00-XX-CS1-091-B11-AB, mRNA sequence.
GW449873.1:305-327
AACTTGTGTCGACTTTTGTCTGCTAATCTT305GTATAGGCTGCCATTTCTTCCCGTCGCACTCCTTTGATGTTTTTCTTTCCCTC
CA00-XX-LV4-018-A07-SB.F Coffea arabica LV4 Coffea arabica cDNA clone CA00-XX-LV4-018-A07-SB, mRNA sequence.
GW488495.1:434-456
AACTTGTGTCGACTTTTGTCTGCTAATCTT434GTATAGGCTGCCATTTCTTCCCGTCGCACTCCTTTGATGTTTTTCTTTCCCTC
CCES33 Coffee EST-SSR sequence Coffea canephora STS cDNA, sequence tagged site.
GF110684.1:884-906
AACTTGTGTCGACTTTTGTCTGCTAATCTT884GTATAGGCTGCCATTTCTTCCCGTCGCACTCCCTTGATGTTTTTCTTTCCCTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGGGAAGAAATGGCAGCCTATAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGGGAAGAAATGGCAGCCTATAC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.218 | 0.210 | search_plus_done; http://172.18.8.135:50400/match?q=CGGGAAGAAATGGCAGCCTATAC&k=0&no_gap=0&offset=0&limit=50
1.081 | 0.863 | search_minus_done; http://172.18.8.135:50400/match?q=GTATAGGCTGCCATTTCTTCCCG&k=0&no_gap=0&offset=0&limit=50
1.089 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).