GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 08:48:46, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 54 from Patent EP1849871.
FB295078.1:1-23
1CGGGATTTTAGTTTTTCCGATCC
JP 2009535026-A/54: Tomato plants having higher levels of resistance to Botrytis.
FU759613.1:1-23
1CGGGATTTTAGTTTTTCCGATCC
Sequence 54 from Patent WO2007123407.
GN039876.1:1-23
1CGGGATTTTAGTTTTTCCGATCC
Sequence 45 from patent US 8093455.
GZ360162.1:24-46
GCGAGCTCGAATTCAATTCCAAC24CGGGATTTTAGTTTTTCCGATCC
JP 2014050395-A/54: Tomato plants having higher levels of resistance to Botrytis.
HW502161.1:1-23
1CGGGATTTTAGTTTTTCCGATCC
Sequence 54 from Patent EP2436770.
JB359030.1:1-23
1CGGGATTTTAGTTTTTCCGATCC
Solanum lycopersicum Micro-Tom DNA, chromosome 3, draft genome sequence.
AP028937.1:1178914-1178936
CACAAGCAAACTGCCAAAAACTTCCGATAA1178914GGATCGGAAAAACTAAAATCCCGAAATACCCCAAACCCTAAAGCAATCAAAGT
Solanum lycopersicum cultivar I-3 chromosome 3.
CP023759.1:317640-317662
CACAAGCAAACTGCCAAAAACTTCCGATAA317640GGATCGGAAAAACTAAAATCCCGAAATACCCCAAACCCTAAAGCAATCAAAGT
Solanum pinnatisectum cultivar CGN17745 chromosome 3.
CP047566.1:500872-500894
GCCAAATATAAAAACAACCATTTCCGATAA500872GGATCGGAAAAACTAAAATCCCGAAATACCCCAAACCCTAAAGCAATCAAAGT
Solanum pennellii chromosome ch03, complete genome.
HG975442.1:320848-320870
CACAAGCAAACTGCCAAAAACTTCCAATAA320848GGATCGGAAAAACTAAAATCCCGAAATACCCCAAACCCTAAAGCAATCAAAGT
Solanum lycopersicum chromosome ch03, complete genome.
HG975515.1:317636-317658
CACAAGCAAACTGCCAAAAACTTCCGATAA317636GGATCGGAAAAACTAAAATCCCGAAATACCCCAAACCCTAAAGCAATCAAAGT
Solanum lycopersicum genome assembly, chromosome: 3.
OU640346.1:533978-534000
CACAAGCAAACTGCCAAAAACTTCCGATAA533978GGATCGGAAAAACTAAAATCCCGAAATACCCCAAACCCTAAAGCAATCAAAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGGGATTTTAGTTTTTCCGATCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGGGATTTTAGTTTTTCCGATCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.299 | 0.290 | search_plus_done; http://172.18.8.135:50800/match?q=CGGGATTTTAGTTTTTCCGATCC&k=0&no_gap=0&offset=0&limit=50
0.406 | 0.107 | search_minus_done; http://172.18.8.135:50800/match?q=GGATCGGAAAAACTAAAATCCCG&k=0&no_gap=0&offset=0&limit=44
0.410 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).