GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 12:17:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mdfws2071O03.g1 Apple_EST_Mdfws Malus domestica cDNA 5' similar to pir|T09015 transketolase (EC 2.2.1.1) precursor, chloroplast - spinach gb|AAD10219.1| transketolase [Spinacia oleracea], mRNA sequenc
GO510511.1:494-516
AAAGAGGTCATATTCCTGTGATTTGTTTCG494CGGGTACGGTCTCTTCTGTTTTAATAATAAAAATATTTTTTTTCTTCACGTTG
TSA: Pyrus pyrifolia mRNA, contig: contig_5254revcomp.
FX427746.1:167-189
AAAGAGGTCATATTCTTGTGATTTATTTCA167CGGGTACGGTCTCTTCTGTTTTAATAATAAAAATAATTTCGTTTTTCACGATG
TSA: Pyrus communis mRNA, contig: lc451.
FX609038.1:535-557
AAAGAGGTCATATTCTTGTGATTTATTTCA535CGGGTACGGTCTCTTCTGTTTTAAAATAAAAATTTCGTTTTTCACGATGTTGC
TSA: Pyrus communis mRNA, contig: lc6071.
FX614658.1:271-293
AAAGAGGTCATATTCTTGTGATTTATTTCA271CGGGTACGGTCTCTTCTGTTTTAAAATNATAATTTCGCGTTTCACGATGTTGC
TSA: Pyrus communis mRNA, contig: lc9946.
FX618531.1:253-275
AAAGAGGTCATATTCTTGTGATTTATTTCA253CGGGTACGGTCTCTTCTGTTTTAAAAAAANAATTTCCGTTTTCACGATGTTGC
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:16127137-16127159
AAAGAGGTCATATTCTTGTGATTTGTTTCG16127137CGGGTACGGTCTCTTCTGTTTTAATAATAAATTTTTTTTTTTTCTTCACGTTG
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:17918149-17918171
AAAGAGGTCATATTCCTGTGATTTGTTTCG17918149CGGGTACGGTCTCTTCTGTTTTAATAATAAAAATATTTTTTTTCTTCACGTTG
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:16964704-16964726
AAAGAGGTCATATTCCTGTGATTTGTTTCG16964704CGGGTACGGTCTCTTCTGTTTTAATAATAAAAATATTTTTTTTCTTCACGTTG
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH045_10886m, 5' end sequence.
AB450721.1:198-220
CATCGTGAAAAACGAAATTATTTTTATTAT198TAAAACAGAAGAGACCGTACCCGTGAAATAAATCACAAGAATATGACCTCTTT
Mdlr7008J05.g1 Apple_EST_Mdlr Malus domestica cDNA similar to pir|T09015 transketolase (EC 2.2.1.1) precursor, chloroplast - spinach gb|AAD10219.1| transketolase [Spinacia oleracea], mRNA sequence.
DR991543.1:201-223
CAACGTGAAGAAAAAAAATATTTTTATTAT201TAAAACAGAAGAGACCGTACCCGCGAAACAAATCACAGGAATATGACCTCTTT
Mdfb8003H22_e3465.b1 Apple_EST_Mdfb Malus domestica cDNA 3' similar to pir|T09015 transketolase (EC 2.2.1.1) precursor, chloroplast - spinach gb|AAD10219.1| transketolase [Spinacia oleracea], mRNA seq
GO546517.1:199-221
CAACCTGAAGAAAAAAAATATTTTTATTAT199TAAAACAGAAGAGACCGTACCCGCGAAACAAATCACAGGAATATGACCTCTTT
Pyrus pyrifolia mRNA, clone: NLE2_24_86, 5' end sequence, expressed in leaf.
HX768691.1:70-92
CATCGTGAAAAACGAAATTATTTTTATTAT70TAAAACAGAAGAGACCGTACCCGTGAAATAAATCACAAGAATATGACCTCTTT
Pyrus pyrifolia mRNA, clone: NLE2_28_27, 5' end sequence, expressed in leaf.
HX768938.1:70-92
CATCGTGAAAAACGAAATTATTTTTATTAT70TAAAACAGAAGAGACCGTACCCGTGAAATAAATCACAAGAATATGACCTCTTT
TSA: Pyrus communis mRNA, contig: lc2792.
FX611379.1:474-496
AACATCGTGAAAACGAAATTATTTTATTAT474TAAAACAGAAGAGACCGTACCCGTGAAATAAATCACAAGAATATGACCTCTTT
TSA: Pyrus x bretschneideri Unigene41377_XinShao mRNA sequence.
JR632994.1:93-115
CATCGTGAAAAACGAAATTATTTTTATTAT93TAAAACAGAAGAGACCGTACCCGTGAAATAAATCACAAGAATATGACCTCTTT
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:19136386-19136408
CAACGTGAAGAAAAAAAAAAATTTTATTAT19136386TAAAACAGAAGAGACCGTACCCGCGAAACAAATCACAAGAATATGACCTCTTT
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:19841342-19841364
ACAACGTGAAGAAAAAAAAAATTTTATTAT19841342TAAAACAGAAGAGACCGTACCCGCGAAACAAATCACAAGAATATGACCTCTTT
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:20422159-20422181
CAACGTGAAGAAAAAAAATATTTTTATTAT20422159TAAAACAGAAGAGACCGTACCCGCGAAACAAATCACAGGAATATGACCTCTTT
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:18834667-18834689
AACAACGTGAAAAAAAAATATTTTTATTAT18834667TAAAACAGAAGAGACCGTACCCGCGAAACAAATCACAAGAATATGACCTCTTT
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:19845548-19845570
CAACGTGAAGAAAAAAAATATTTTTATTAT19845548TAAAACAGAAGAGACCGTACCCGCGAAACAAATCACAGGAATATGACCTCTTT
Malus domestica genome assembly, chromosome: 2.
OU696678.1:20034599-20034621
CAACGTGAAGAAAAAAAATATTTTTATTAT20034599TAAAACAGAAGAGACCGTACCCGCGAAACAAATCACAGGAATATGACCTCTTT
Malus domestica genome assembly, chromosome: 2.
OU744543.1:20201128-20201150
CAACGTGAAGAAAAAAAATATTTTTATTAT20201128TAAAACAGAAGAGACCGTACCCGCGAAACAAATCACAGGAATATGACCTCTTT
Malus domestica genome assembly, chromosome: 2.
OU744954.1:19842180-19842202
CAACGTGAAGAAAAAAAATATTTTTATTAT19842180TAAAACAGAAGAGACCGTACCCGCGAAACAAATCACAGGAATATGACCTCTTT
Malus domestica genome assembly, chromosome: 2.
OU744992.1:20362028-20362050
CAACGTGAAGAAAAAAAATATTTTTATTAT20362028TAAAACAGAAGAGACCGTACCCGCGAAACAAATCACAGGAATATGACCTCTTT
Pyrus communis genome assembly, chromosome: 10.
OY757077.1:14800338-14800360
CATCGTGAAAAACGATATTATTTTTATTAT14800338TAAAACAGAAGAGACCGTACCCGTGAAATAAATCACAAGAATATGACCTCTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGGGTACGGTCTCTTCTGTTTTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGGGTACGGTCTCTTCTGTTTTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.284 | 0.275 | search_plus_done; http://172.18.8.135:50400/match?q=CGGGTACGGTCTCTTCTGTTTTA&k=0&no_gap=0&offset=0&limit=50
0.976 | 0.692 | search_minus_done; http://172.18.8.135:50400/match?q=TAAAACAGAAGAGACCGTACCCG&k=0&no_gap=0&offset=0&limit=42
0.987 | 0.011 | cgi_end;

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