GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-03-14 18:41:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:6369754-6369773
TGCTCTTTGGTTTCTTAGAGTTGGATGCAA6369754CGGTAGTAGCAGCTTCAGCAATGGCTTTAGCTAAACTCTCAAAATCAAAA
Moraxella nasicaprae strain ZY201224 chromosome, complete genome.
CP089977.1:1272371-1272390
CGTCAGCAGCAGTGGTAGCAGCTTCGGTAG1272371CGGTAGTAGCAGCTTCAGCAGCTTTTTCTTCAGCTGGCTTTGAGCAAGCA
Cepaea hortensis genome assembly, chromosome: 1.
OY992876.1:311416798-311416817
TAGTAGTAGTAGCAGCAGCAGCAGCAGTAG311416798CGGTAGTAGCAGCTTCAGCAGTAGCGGTAGTAGTAATAGTATTAGTCGTA
Raphanus sativus mRNA, clone: RSCF19E11, 5' end sequence.
FY432701.1:451-470
TTTTGATTTTGAGAGTTTAGCTAAAGCCAT451TGCTGAAGCTGCTACTACCGTTGCATCCAACTCTAAGAAACCAAAGAGCA
Raphanus sativus mRNA, clone: RSCS12A19, 5' end sequence.
FY450023.1:448-467
TTTTGATTTTGAGAGTTTAGCTAAAGCCAT448TGCTGAAGCTGCTACTACCGTTGCATCCAACTCTAAGAAACCAAAGAGCA
TSA: Raphanus sativus RS26683 mRNA sequence.
JT811230.1:482-501
TTTTGATTTTGAGAGTTTAGCTAAAGCCAT482TGCTGAAGCTGCTACTACCGTTGCATCCAACTCTAAGAAACCAAAGAGCA
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:37663196-37663215
TTTTGATTTTGAGAGTTTAGCTAAAGCCAT37663196TGCTGAAGCTGCTACTACCGTTGCATCCAACTCTAAGAAACCAAAGAGCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGGTAGTAGCAGCTTCAGCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGGTAGTAGCAGCTTCAGCA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.355 | 0.346 | search_plus_done; http://172.18.8.135:50400/match?q=CGGTAGTAGCAGCTTCAGCA&k=0&no_gap=0&offset=0&limit=50
0.639 | 0.284 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTGAAGCTGCTACTACCG&k=0&no_gap=0&offset=0&limit=47
0.642 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).