GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:36:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 60106 from patent US 7365185.
EA681227.1:28354-28373
CTTCTATACTGCACTTGGTTATCTTTACTC28354CGGTGAGCCCTCTTATGTGAACCCAAGTGCCATTTTAGTTTATTTATAAT
Sequence 60106 from patent US 7790958.
GX546081.1:28354-28373
CTTCTATACTGCACTTGGTTATCTTTACTC28354CGGTGAGCCCTCTTATGTGAACCCAAGTGCCATTTTAGTTTATTTATAAT
Sequence 2985 from patent US 7868149.
GX907077.1:28354-28373
CTTCTATACTGCACTTGGTTATCTTTACTC28354CGGTGAGCCCTCTTATGTGAACCCAAGTGCCATTTTAGTTTATTTATAAT
Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0004P24, complete sequence.
AC135459.3:47094-47113
CTTCTATACTGCACTTGGTTATCTTTACTC47094CGGTGAGCCCTCTTATGTGAACCCAAGTGCCATTTTAGTTTATTTATAAT
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141939.1:44220755-44220774
ATAGTATGATTTTCTTAGATGATACCAAGT44220755CGGTGAGCCCTCTTATGTGATCGCCATCGAGATTAAAAGAGAGAGAGAGA
Malus domestica genome assembly, chromosome: 13.
OU744554.1:42917645-42917664
ATAGTATGATTTTCTTAGATGATACCAAGT42917645CGGTGAGCCCTCTTATGTGATCGCCATCGAGATTAAAAGAGAGAGAGAGA
Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
AP014967.1:7850602-7850621
ATTATAAATAAACTAAAATGGCACTTGGGT7850602TCACATAAGAGGGCTCACCGGAGTAAAGATAACCAAGTGCAGTATAGAAG
Oryza sativa indica subgroup Inn Ma Yebaw DNA, chromosome: 11.
AP027395.1:8180419-8180438
ATTATAAATAAACTAAAATGGCACTTGGGT8180419TCACATAAGAGGGCTCACCGGAGTAAAGATAACCAAGTGCAGTATAGAAG
Oryza sativa Indica Group cultivar Zhenshan 97 chromosome 11.
CP056062.1:7995059-7995078
ATTATAAATAAACTAAAATGGCACTTGGGT7995059TCACATAAGAGGGCTCACCGGAGTAAAGATAACCAAGTGCAGTATAGAAG
Oryza sativa Japonica Group cultivar Changxianggeng 1813 chromosome 6.
CP101146.1:7593192-7593211
ATTATAAATAAACTAAAATGGCACTTGGGT7593192TCACATAAGAGGGCTCACCGGAGTAAAGATAACCAAGTGCAGTATAGAAG
Oryza sativa Japonica Group cultivar Nipponbare isolate AGIS-1.0 chromosome 11.
CP132245.1:8283523-8283542
ATTATAAATAAACTAAAATGGCACTTGGGT8283523TCACATAAGAGGGCTCACCGGAGTAAAGATAACCAAGTGCAGTATAGAAG
Oryza sativa genome assembly, chromosome: 11.
OX637256.1:5857306-5857325
ATTATAAATAAACTAAAATGGCACTTGGGT5857306TCACATAAGAGGGCTCACCGGAGTAAAGATAACCAAGTGCAGTATAGAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGGTGAGCCCTCTTATGTGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGGTGAGCCCTCTTATGTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.157 | 0.148 | search_plus_done; http://172.18.8.135:50400/match?q=CGGTGAGCCCTCTTATGTGA&k=0&no_gap=0&offset=0&limit=50
0.190 | 0.033 | search_minus_done; http://172.18.8.135:50400/match?q=TCACATAAGAGGGCTCACCG&k=0&no_gap=0&offset=0&limit=44
0.193 | 0.004 | cgi_end;

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