GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 21:37:35, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:6350207-6350226
TGTAAATCACTCTTATATTTAAGGTGTAAA6350207CGGTGTGTAGGTCTGCTCAAAACTCAGGTTGGGTGCAGCTTCGACTGCAA
Brassica napus cultivar Xiang5A chromosome 2.
CP151897.1:5101606-5101625
TGTAAATCACTCTTATATTTAAGGTGTAAA5101606CGGTGTGTAGGTCTGCTCAAAACTCAGGTTGGGTGCAGCTTCGACTGCAA
Brassica napus cultivar Xiang5A chromosome 12.
CP151907.1:8329517-8329536
GGTTAAGGGGCATTATATTTAAGGTGTAAA8329517CGGTGTGTAGGTCTGCTCAAAACTCAGGTTGGGTGCAGCTTCGACTGAAA
Brassica napus genome assembly, chromosome: A02.
HG994356.1:6082758-6082777
GGTTAAGGGGCATTATATTTAAGGTGTAAA6082758CGGTGTGTAGGTCTGCTCAAAACTCAGGTTGGGTGCAGCTTCGACTGCAA
Brassica napus genome assembly, chromosome: C02.
HG994366.1:8579622-8579641
GGTTAAGGGGCATTATATTTAAGGTGTAAA8579622CGGTGTGTAGGTCTGCTCAAAACTCAGGTTGGGTGCAGCTTCGACTGAAA
Brassica rapa genome, scaffold: A02.
LR031573.1:5967952-5967971
TGTAAATCACTCTTATATTTAAGGTGTAAA5967952CGGTGTGTAGGTCTGCTCAAAACTCAGGTTGGGTGCAGCTTCGACTGCAA
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:10141148-10141167
GGTTAAGGGGCATTATATTTAAGGTGTAAA10141148CGGTGTGTAGGTCTGCTCAAAACTCAGGTTGGGTGCAGCTTCGACTGTAA
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:6137712-6137731
TGTAAATCACTCTTATATTTAAGGTGTAAA6137712CGGTGTGTAGGTCTGCTCAAAACTCAGGTTGGGTGCAGCTTCGACTGCAA
KBrB132J09F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB132J09, genomic survey sequence.
ED538850.1:97-116
TTGCAGTCGAAGCTGCACCCAACCTGAGTT97TTGAGCAGACCTACACACCGTTTACACCTTAAATATAATGCCCCTTAACC
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:58082861-58082880
TTTCAGTCGAAGCTGCACCCAACCTGAGTT58082861TTGAGCAGACCTACACACCGTTTACACCTTAAATATAATGCCCCTTAACC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGGTGTGTAGGTCTGCTCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGGTGTGTAGGTCTGCTCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.194 | 0.185 | search_plus_done; http://172.18.8.135:50800/match?q=CGGTGTGTAGGTCTGCTCAA&k=0&no_gap=0&offset=0&limit=50
0.294 | 0.101 | search_minus_done; http://172.18.8.135:50800/match?q=TTGAGCAGACCTACACACCG&k=0&no_gap=0&offset=0&limit=42
0.296 | 0.001 | cgi_end;

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