GGGenome | Results

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2025-04-09 00:27:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

0179519 Brassica napus Leaf library Brassica napus cDNA, mRNA sequence.
EV099569.1:271-290

AGTCTCTCTTCACAGCTTCTTCAACGAATA271CGGTTCACATGAGAAAACGGCTCATGAGCTGCCTTTGGAGCTGCTTTCTT

0125979 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV120667.1:212-231

AGTCTCTCTTCACAGATTCTTCAACGAATA212CGGTTCACATGAGAAAACGGCTCATGAGTTGCTTTTGGAGCTGCTTTTTT

0209607 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV143674.1:184-203

AGTCTCTCTTCACAGATTCTTCAACGAATA184CGGTTCACATGAGAAAACGGCTCATGAGCTGCCTTTGGAGCTGCTTTCTT

BR024975 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-076F11 5', mRNA sequence.
EX040331.1:203-222

CCTTCTCTCTCACAGTTTTTTCAGCGAATA203CGGTTCACATGAGAAAACGGCTCATGAGTTGCTTTTGGAGCTGCTTTTTT

0260379 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO947193.1:188-207

AGTCTTTCTTCACAGTTTCTTCAACGAATA188CGGTTCACATGAGAAAACGGCTCATGAGCTGCTTTTGGAGCAGCTTTTTT

TSA: Raphanus sativus var. sativus RNA, contig: WG3_14876.
FX673107.1:227-246

TCTCTCTGTTCACAGTTCCTTCAACGAATA227CGGTTCACATGAGAAAACGGCTCATGAGTTGCTTTTGGAGCAGCTTTCTT

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_15587.
FX697536.1:110-129

CCTTCTCTCTCACAGTTTTTTCAGCGAATA110CGGTTCACATGAGAAAACGGCTCATGAGTTGCTTTTGGAGCTGCTTTTTT

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_7016.
FX701096.1:68-87

AGTCTTTCTTCACAGTTTCTTCAACGAATA68CGGTTCACATGAGAAAACGGCTCATGAGCTGCTTTTGGAGCAGCTTTTTT

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_17084.
FX731494.1:171-190

GTCTTCTCTTCACAGTTTCTTCAACGAATA171CGGTTCACATGAGAAAACGGCTCATGAGTTGCTTTTGGAGCTGCTTTTTT

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_29675.
FX734284.1:165-184

TCTCTCTGTTCACAGTTCCTTCAACGAATA165CGGTTCACATGAGAAAACGGCTCATGAGTTGCTTTTGGAGCAGCTTTCTT

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH029A20, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC232557.1:64211-64230

AGTCTTTCTTCACAGTTTCTTCAACGAATA64211CGGTTCACATGAGAAAACGGCTCATGAGCTGCTTTTGGAGCAGCTTTTTT

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB089G06, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.
AC241075.1:24958-24977

AGTCTTTCTTCACAGTTTCTTCAACGAATA24958CGGTTCACATGAGAAAACGGCTCATGAGCTGCTTTTGGAGCAGCTTTTTT

Brassica rapa subsp. pekinensis clone KBrH055H09, complete sequence.
CU695303.1:124728-124747

CCTTCTCTCTCACAGTTTTTTCAGCGAATA124728CGGTTCACATGAGAAAACGGCTCATGAGTTGCTTTTGGAGCTGCTTTTTT

Camelina hispida cultivar hispida voucher DAO 902780 chromosome 4.
CP094634.1:16745240-16745259

ACAATGGCTTCACAACAACTTCAGCGAATA16745240CGGTTCACATGAGAAAACGGCTCAGGTACTTTTGGAGCAGCTTTTTTGGC

Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:54264275-54264294

AGTCTCTCTTCACAGCTTCTTCAACGAATA54264275CGGTTCACATGAGAAAACGGCTCATGAGCTGCCTTTGGAGCTGCTTTCTT

Brassica rapa genome, scaffold: A03.
LR031572.1:30076952-30076971

AGTCTTTCTTCACAGTTTCTTCAACGAATA30076952CGGTTCACATGAGAAAACGGCTCATGAGCTGCTTTTGGAGCAGCTTTTTT

Brassica rapa genome assembly, chromosome: A03.
LS974619.2:30138265-30138284

AGTCTTTCTTCACAGTTTCTTCAACGAATA30138265CGGTTCACATGAGAAAACGGCTCATGAGCTGCTTTTGGAGCAGCTTTTTT

Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:41241984-41242003

TCTCTCTGTTCACAGTTCCTTCAACGAATA41241984CGGTTCACATGAGAAAACGGCTCATGAGTTGCTTTTGGAGCAGCTTTCTT

Pinctada fucata DNA, chromosome 9, nearly complete sequence, Principal Pseudohaplotype.
AP027110.1:14132421-14132440

AACGTAAAACCTACTGTTTACAAGTCTGGT14132421CGGTTCACATGAGAAAACGGACGTGTTGTGGAGATCAAACTGCGCCACCT

Pinctada fucata DNA, chromosome 9, nearly complete sequence, Alternate Pseudohaplotype.
AP027124.1:13817334-13817353

AACGTAAAACCTACTGTTTACAAGTCTGGT13817334CGGTTCACATGAGAAAACGGACGTGTTGTGGAGATCAAACTGCGCCACCT

Brassica oleracea var. viridis mRNA, clone: KALE-044K12, 3' end sequence.
DK532229.1:588-607

AAGAAAGCAGCTCCAAAGGCAGCTCATGAG588CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT

Brassica oleracea var. viridis mRNA, clone: KALE-053P23, 3' end sequence.
DK535786.1:464-483

AAGAAAGCAGCTCCAAAGGCAGCTCATGAG464CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT

BNBS2DCT_UP_023_G01_12MAR2005_003 Brassica napus seeds BNBS2DCT Brassica napus cDNA 5', mRNA sequence.
EE452688.1:349-368

AAGAAAGCAGCTCCAAAGGCAGCTCATGAG349CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT

BNDH5DCT_UP_007_E04_16DEC2003_024 Brassica napus BNDH5DCT Brassica napus cDNA 5', mRNA sequence.
EE461328.1:392-411

AAAAAAGCAGCTCCAAAAGCAACTCATGAG392CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAATCTGTGAAGAGAGACT

9RDBNGA_UP_058_H12_02APR2005_082 Brassica napus - 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
EE544895.1:365-384

AAGAAAGCAGCTCCAAAGGCAGCTCATGAG365CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT

9RDBNGA_UP_065_A10_02APR2005_080 Brassica napus - 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
EE545233.1:172-191

AAAAAAGCAGCTCCAAAAGCAACTCATGAG172CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAATCTGTGAAGAGAGACT

BNZB_RP_002_B04_22APR2004_030 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE556432.1:497-516

AAAAAAGCAGCTCCAAAAGCAACTCATGAG497CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAATCTGTGAAGAGAGACT

BNZB_RP_005_E02_22APR2004_008 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE556677.1:488-507

AAAAAAGCAGCTCCAAAAGCAACTCATGAG488CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAATCTGTGAAGAGAGACT

BNARO2GH_T3_009_D02_15DEC2006_010 Brassica napus BNARO2GH Brassica napus cDNA 5', mRNA sequence.
ES911360.1:36-55

AAGAAAGCAGCTCCAAAGGCAGCTCATGAG36CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT

47RDOAH_UP_052_A10_30JAN2006_080 Brassica oleracea 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
ES939994.1:500-519

AAGAAAGCAGCTCCAAAGGCAGCTCATGAG500CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT

BNSCS1CT_UP_069_E05_26MAR2007_039 Brassica napus BNSCS1CT Brassica napus cDNA 5', mRNA sequence.
EV015110.1:583-602

AAAAAAGCAGCTCCAAAAGCAACTCATGAG583CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAATCTGTGAAGAGAGACT

BR057067 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-003A05 5', mRNA sequence.
EX072423.1:321-340

AAAAAAGCTGCTCCAAAAGCAGCTCATGAG321CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAAAGACT

BR057589 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-009F02 5', mRNA sequence.
EX072945.1:320-339

AAAAAAGCTGCTCCAAAAGCAGCTCATGAG320CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAAAGACT

BR057651 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-010D06 5', mRNA sequence.
EX073007.1:320-339

AAAAAAGCTGCTCCAAAAGCAGCTCATGAG320CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAAAGACT

BR058328 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-018H09 5', mRNA sequence.
EX073684.1:320-339

AAAAAAGCTGCTCCAAAAGCAGCTCATGAG320CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAAAGACT

BNAOV1GH_T3_082_H10_17SEPT2007_066 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR448946.1:527-546

AAGAAAGCAGCTCCAAAGGCAGCTCATGAG527CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT

BNAOV1GH_T3_093_C05_20SEPT2007_043 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR449873.1:160-179

AAAAAAGCAGCTCCAAAAGCAACTCATGAG160CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAGAAGAC

KBrB023L19F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB023L19, genomic survey sequence.
DX027973.1:603-622

AAAAAAGCTGCTCCAAAAGCAGCTCATGAG603CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAAAGACT

KBrB130K23F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB130K23, genomic survey sequence.
ED537450.1:629-648

AAAAAAGCTGCTCCAAAAGCAGCTCATGAG629CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAAAGACT

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004O21, complete sequence.
AC189637.2:105250-105269

AAAAAAGCAGCTCCAAAAGCAACTCATGAG105250CCGTTTTCTCATGTGAACCGTATTCGCTGAAAAAACTGTGAGAGAGAAGG

Brassica napus mRNA with similarity to p55cdc and fizzy genes.
AJ224078.1:1497-1516

AAGAAAGCAGCTCCAAAGGCAGCTCATGAG1497CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT

Camelina hispida cultivar hispida voucher DAO 902780 chromosome 4.
CP094634.1:16727818-16727837

GCCAAAAAAGCTGCTCCAAAAGTACCTGAG16727818CCGTTTTCTCATGTGAACCGTATTCGCTGAAGTTGTTGTGAAGCCATTGT

Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:2286312-2286331

AAAAAAGCAGCTCCAAAAGCAACTCATGAG2286312CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAGAAGAC

Brassica napus genome assembly, chromosome: A01.
HG994355.1:2228782-2228801

AAAAAAGCAGCTCCAAAAGCAACTCATGAG2228782CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAGAAGAC

Brassica napus genome assembly, chromosome: C01.
HG994365.1:2837161-2837180

AAGAAAGCAGCTCCAAAGGCAGCTCATGAG2837161CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT

Brassica rapa genome, scaffold: A01.
LR031571.1:2219402-2219421

AAAAAAGCAGCTCCAAAAGCAACTCATGAG2219402CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAGAAGAC

Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:2786396-2786415

AAGAAAGCAGCTCCAAAGGCAGCTCATGAG2786396CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT

Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:2376152-2376171

AAGAAAGCTGCTCCAAAAGCAACTCATGAG2376152CCGTTTTCTCATGTGAACCGTATTCGTTGAAGGAACTGTGAACAGAGAGA

Brassica rapa genome assembly, chromosome: A01.
LS974617.2:2219525-2219544

AAAAAAGCAGCTCCAAAAGCAACTCATGAG2219525CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAGAAGAC

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.491 | 0.482 | search_plus_done; http://172.18.8.135:50400/match?q=CGGTTCACATGAGAAAACGG&k=0&no_gap=0&offset=0&limit=50
1.540 | 1.050 | search_minus_done; http://172.18.8.135:50400/match?q=CCGTTTTCTCATGTGAACCG&k=0&no_gap=0&offset=0&limit=30
1.559 | 0.018 | cgi_end;

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