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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-18 03:29:39, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

0179519 Brassica napus Leaf library Brassica napus cDNA, mRNA sequence.
EV099569.1:271-290
AGTCTCTCTTCACAGCTTCTTCAACGAATA271CGGTTCACATGAGAAAACGGCTCATGAGCTGCCTTTGGAGCTGCTTTCTT
0125979 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV120667.1:212-231
AGTCTCTCTTCACAGATTCTTCAACGAATA212CGGTTCACATGAGAAAACGGCTCATGAGTTGCTTTTGGAGCTGCTTTTTT
0209607 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV143674.1:184-203
AGTCTCTCTTCACAGATTCTTCAACGAATA184CGGTTCACATGAGAAAACGGCTCATGAGCTGCCTTTGGAGCTGCTTTCTT
BR024975 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-076F11 5', mRNA sequence.
EX040331.1:203-222
CCTTCTCTCTCACAGTTTTTTCAGCGAATA203CGGTTCACATGAGAAAACGGCTCATGAGTTGCTTTTGGAGCTGCTTTTTT
0260379 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO947193.1:188-207
AGTCTTTCTTCACAGTTTCTTCAACGAATA188CGGTTCACATGAGAAAACGGCTCATGAGCTGCTTTTGGAGCAGCTTTTTT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_14876.
FX673107.1:227-246
TCTCTCTGTTCACAGTTCCTTCAACGAATA227CGGTTCACATGAGAAAACGGCTCATGAGTTGCTTTTGGAGCAGCTTTCTT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_15587.
FX697536.1:110-129
CCTTCTCTCTCACAGTTTTTTCAGCGAATA110CGGTTCACATGAGAAAACGGCTCATGAGTTGCTTTTGGAGCTGCTTTTTT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_7016.
FX701096.1:68-87
AGTCTTTCTTCACAGTTTCTTCAACGAATA68CGGTTCACATGAGAAAACGGCTCATGAGCTGCTTTTGGAGCAGCTTTTTT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_17084.
FX731494.1:171-190
GTCTTCTCTTCACAGTTTCTTCAACGAATA171CGGTTCACATGAGAAAACGGCTCATGAGTTGCTTTTGGAGCTGCTTTTTT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_29675.
FX734284.1:165-184
TCTCTCTGTTCACAGTTCCTTCAACGAATA165CGGTTCACATGAGAAAACGGCTCATGAGTTGCTTTTGGAGCAGCTTTCTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH029A20, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC232557.1:64211-64230
AGTCTTTCTTCACAGTTTCTTCAACGAATA64211CGGTTCACATGAGAAAACGGCTCATGAGCTGCTTTTGGAGCAGCTTTTTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB089G06, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.
AC241075.1:24958-24977
AGTCTTTCTTCACAGTTTCTTCAACGAATA24958CGGTTCACATGAGAAAACGGCTCATGAGCTGCTTTTGGAGCAGCTTTTTT
Brassica rapa subsp. pekinensis clone KBrH055H09, complete sequence.
CU695303.1:124728-124747
CCTTCTCTCTCACAGTTTTTTCAGCGAATA124728CGGTTCACATGAGAAAACGGCTCATGAGTTGCTTTTGGAGCTGCTTTTTT
Camelina hispida cultivar hispida voucher DAO 902780 chromosome 4.
CP094634.1:16745240-16745259
ACAATGGCTTCACAACAACTTCAGCGAATA16745240CGGTTCACATGAGAAAACGGCTCAGGTACTTTTGGAGCAGCTTTTTTGGC
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:54264275-54264294
AGTCTCTCTTCACAGCTTCTTCAACGAATA54264275CGGTTCACATGAGAAAACGGCTCATGAGCTGCCTTTGGAGCTGCTTTCTT
Brassica rapa genome, scaffold: A03.
LR031572.1:30076952-30076971
AGTCTTTCTTCACAGTTTCTTCAACGAATA30076952CGGTTCACATGAGAAAACGGCTCATGAGCTGCTTTTGGAGCAGCTTTTTT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:30138265-30138284
AGTCTTTCTTCACAGTTTCTTCAACGAATA30138265CGGTTCACATGAGAAAACGGCTCATGAGCTGCTTTTGGAGCAGCTTTTTT
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:41241984-41242003
TCTCTCTGTTCACAGTTCCTTCAACGAATA41241984CGGTTCACATGAGAAAACGGCTCATGAGTTGCTTTTGGAGCAGCTTTCTT
Brassica nigra genome assembly, chromosome: 3.
OZ173173.1:50597916-50597935
AGTCTCTCTTCACAGTTTCTTCAACGGATA50597916CGGTTCACATGAGAAAACGGCTCGTGAGTTGCTTTTGGGGCAGCTTTTTT
Pinctada fucata DNA, chromosome 9, nearly complete sequence, Principal Pseudohaplotype.
AP027110.1:14132421-14132440
AACGTAAAACCTACTGTTTACAAGTCTGGT14132421CGGTTCACATGAGAAAACGGACGTGTTGTGGAGATCAAACTGCGCCACCT
Pinctada fucata DNA, chromosome 9, nearly complete sequence, Alternate Pseudohaplotype.
AP027124.1:13817334-13817353
AACGTAAAACCTACTGTTTACAAGTCTGGT13817334CGGTTCACATGAGAAAACGGACGTGTTGTGGAGATCAAACTGCGCCACCT
Brassica oleracea var. viridis mRNA, clone: KALE-044K12, 3' end sequence.
DK532229.1:588-607
AAGAAAGCAGCTCCAAAGGCAGCTCATGAG588CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT
Brassica oleracea var. viridis mRNA, clone: KALE-053P23, 3' end sequence.
DK535786.1:464-483
AAGAAAGCAGCTCCAAAGGCAGCTCATGAG464CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT
BNBS2DCT_UP_023_G01_12MAR2005_003 Brassica napus seeds BNBS2DCT Brassica napus cDNA 5', mRNA sequence.
EE452688.1:349-368
AAGAAAGCAGCTCCAAAGGCAGCTCATGAG349CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT
BNDH5DCT_UP_007_E04_16DEC2003_024 Brassica napus BNDH5DCT Brassica napus cDNA 5', mRNA sequence.
EE461328.1:392-411
AAAAAAGCAGCTCCAAAAGCAACTCATGAG392CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAATCTGTGAAGAGAGACT
9RDBNGA_UP_058_H12_02APR2005_082 Brassica napus - 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
EE544895.1:365-384
AAGAAAGCAGCTCCAAAGGCAGCTCATGAG365CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT
9RDBNGA_UP_065_A10_02APR2005_080 Brassica napus - 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
EE545233.1:172-191
AAAAAAGCAGCTCCAAAAGCAACTCATGAG172CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAATCTGTGAAGAGAGACT
BNZB_RP_002_B04_22APR2004_030 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE556432.1:497-516
AAAAAAGCAGCTCCAAAAGCAACTCATGAG497CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAATCTGTGAAGAGAGACT
BNZB_RP_005_E02_22APR2004_008 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE556677.1:488-507
AAAAAAGCAGCTCCAAAAGCAACTCATGAG488CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAATCTGTGAAGAGAGACT
BNARO2GH_T3_009_D02_15DEC2006_010 Brassica napus BNARO2GH Brassica napus cDNA 5', mRNA sequence.
ES911360.1:36-55
AAGAAAGCAGCTCCAAAGGCAGCTCATGAG36CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT
47RDOAH_UP_052_A10_30JAN2006_080 Brassica oleracea 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
ES939994.1:500-519
AAGAAAGCAGCTCCAAAGGCAGCTCATGAG500CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT
BNSCS1CT_UP_069_E05_26MAR2007_039 Brassica napus BNSCS1CT Brassica napus cDNA 5', mRNA sequence.
EV015110.1:583-602
AAAAAAGCAGCTCCAAAAGCAACTCATGAG583CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAATCTGTGAAGAGAGACT
BR057067 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-003A05 5', mRNA sequence.
EX072423.1:321-340
AAAAAAGCTGCTCCAAAAGCAGCTCATGAG321CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAAAGACT
BR057589 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-009F02 5', mRNA sequence.
EX072945.1:320-339
AAAAAAGCTGCTCCAAAAGCAGCTCATGAG320CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAAAGACT
BR057651 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-010D06 5', mRNA sequence.
EX073007.1:320-339
AAAAAAGCTGCTCCAAAAGCAGCTCATGAG320CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAAAGACT
BR058328 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-018H09 5', mRNA sequence.
EX073684.1:320-339
AAAAAAGCTGCTCCAAAAGCAGCTCATGAG320CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAAAGACT
BNAOV1GH_T3_082_H10_17SEPT2007_066 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR448946.1:527-546
AAGAAAGCAGCTCCAAAGGCAGCTCATGAG527CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT
BNAOV1GH_T3_093_C05_20SEPT2007_043 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR449873.1:160-179
AAAAAAGCAGCTCCAAAAGCAACTCATGAG160CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAGAAGAC
KBrB023L19F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB023L19, genomic survey sequence.
DX027973.1:603-622
AAAAAAGCTGCTCCAAAAGCAGCTCATGAG603CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAAAGACT
KBrB130K23F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB130K23, genomic survey sequence.
ED537450.1:629-648
AAAAAAGCTGCTCCAAAAGCAGCTCATGAG629CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAAAGACT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004O21, complete sequence.
AC189637.2:105250-105269
AAAAAAGCAGCTCCAAAAGCAACTCATGAG105250CCGTTTTCTCATGTGAACCGTATTCGCTGAAAAAACTGTGAGAGAGAAGG
Brassica napus mRNA with similarity to p55cdc and fizzy genes.
AJ224078.1:1497-1516
AAGAAAGCAGCTCCAAAGGCAGCTCATGAG1497CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT
Camelina hispida cultivar hispida voucher DAO 902780 chromosome 4.
CP094634.1:16727818-16727837
GCCAAAAAAGCTGCTCCAAAAGTACCTGAG16727818CCGTTTTCTCATGTGAACCGTATTCGCTGAAGTTGTTGTGAAGCCATTGT
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:2286312-2286331
AAAAAAGCAGCTCCAAAAGCAACTCATGAG2286312CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAGAAGAC
Brassica napus cultivar Xiang5A chromosome 1.
CP151896.1:2286312-2286331
AAAAAAGCAGCTCCAAAAGCAACTCATGAG2286312CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAGAAGAC
Brassica napus cultivar Xiang5A chromosome 11.
CP151906.1:2920991-2921010
AAGAAAGCAGCTCCAAAGGCAGCTCATGAG2920991CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT
Brassica napus genome assembly, chromosome: A01.
HG994355.1:2228782-2228801
AAAAAAGCAGCTCCAAAAGCAACTCATGAG2228782CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAGAAGAC
Brassica napus genome assembly, chromosome: C01.
HG994365.1:2837161-2837180
AAGAAAGCAGCTCCAAAGGCAGCTCATGAG2837161CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT
Brassica rapa genome, scaffold: A01.
LR031571.1:2219402-2219421
AAAAAAGCAGCTCCAAAAGCAACTCATGAG2219402CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAGAAGAC
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:2786396-2786415
AAGAAAGCAGCTCCAAAGGCAGCTCATGAG2786396CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAGCTGTGAAGAGAGACT
Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:2376152-2376171
AAGAAAGCTGCTCCAAAAGCAACTCATGAG2376152CCGTTTTCTCATGTGAACCGTATTCGTTGAAGGAACTGTGAACAGAGAGA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:2219525-2219544
AAAAAAGCAGCTCCAAAAGCAACTCATGAG2219525CCGTTTTCTCATGTGAACCGTATTCGTTGAAGAAACTGTGAAGAGAAGAC
Pinctada radiata genome assembly, chromosome: 13.
OZ178928.1:39302077-39302096
AGGTGGCGCAGTTTGATCTCCACAACACGT39302077CCGTTTTCTCATGTGAACCGACCAGACTTGTAAACAGTAGGTTTTACGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGGTTCACATGAGAAAACGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGGTTCACATGAGAAAACGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.444 | 0.435 | search_plus_done; http://172.18.8.135:50800/match?q=CGGTTCACATGAGAAAACGG&k=0&no_gap=0&offset=0&limit=50
1.456 | 1.012 | search_minus_done; http://172.18.8.135:50800/match?q=CCGTTTTCTCATGTGAACCG&k=0&no_gap=0&offset=0&limit=29
1.478 | 0.022 | cgi_end;

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