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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 11:02:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EST636410 MTUS Medicago truncatula cDNA clone MTUS-1H12, mRNA sequence.
CA918692.1:223-244
TTTGAACTTCATAATGATTCTTTTAATTTT223CGTAATGCAACCGTCACAGTGCAATCTGATCTTCATAACCACCGTACTCTCT
Trifolium repens mRNA, clone: WCC12c03_041, unspecified EST.
FY458214.1:693-714
TTTGAACTTCATAATGATTTTTTTAATTTT693CGTAATGCAACCGTCACAGTGCAATCTGATCTTCAAAACCACCGTACTCTCT
Trifolium repens mRNA, clone: WCC34l12_094, unspecified EST.
FY466183.1:726-747
TTTGAACTTCATAATGATTTTTTTAATTTT726CGTAATGCAACCGTCACAGTGCAATCTGATCTTCAA
MEUBG62TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence.
GE352568.1:185-206
TTTGAACTTCATAATGATTCTTTTAATTTT185CGTAATGCAACCGTCACAGTGCAATCTGATCTTCATAACCACCGTACTCTCT
TSA: Pisum sativum contig00867.PisaPYK9 mRNA sequence.
JR951601.1:778-799
TTTAAACTTCATAACTATCCTTTTAATTTT778CGTAATGCAACCGTCACAGTGCAGTTTGATCTTTAAAACCACTGTACTCTCT
Trifolium subterraneum genome assembly, chromosome: 3.
OX637463.1:34800550-34800571
TTTGAACTTCATAATGATTTTTTTAATTTT34800550CGTAATGCAACCGTCACAGTGCAATCTGATCTTCAAAACCACCGTACTCTGA
Trifolium fragiferum genome assembly, chromosome: 8.
OX940796.1:23703264-23703285
TTTGAACTTCATAATGATTTTTTTAATTTT23703264CGTAATGCAACCGTCACAGTGCAATCTGATCTTCAAAACCACCGTACTCTGA
Medicago lupulina genome assembly, chromosome: 3.
OY283141.1:23904135-23904156
TTTAAACTTCATAATGATTCTTTTAATTTT23904135CGTAATGCAACCGTCACAGTGCAATCTGATCTTCATAACCACCGTACTCTGC
EST334857 DSIL Medicago truncatula cDNA clone pDSIL-3K19, mRNA sequence.
AW775792.1:474-495
AGAGAGTACGGTGGTTATGAAGATCAGATT474GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
EST457296 DSIL Medicago truncatula cDNA clone pDSIL-21F24, mRNA sequence.
BF519831.1:144-165
AGAGAGTACGGTGGTTATGAAGATCAGATT144GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
EST458858 DSIL Medicago truncatula cDNA clone pDSIL-43A10, mRNA sequence.
BF521382.1:471-492
AGAGAGTACGGTGGTTATGAAGATCAGATT471GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
NF014A11IN1F1084 Insect herbivory Medicago truncatula cDNA clone NF014A11IN 5', mRNA sequence.
BF641848.1:478-499
AGAGAGTACGGTGGTTATGAAGATCAGATT478GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
NF039E03EC1F1022 Elicited cell culture Medicago truncatula cDNA clone NF039E03EC 5', mRNA sequence.
BF645941.1:477-498
AGAGAGTACGGTGGTTATGAAGATCAGATT477GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGNTNAAG
NF046C07EC1F1053 Elicited cell culture Medicago truncatula cDNA clone NF046C07EC 5', mRNA sequence.
BF648293.1:469-490
AGAGAGTACGGTGGTTATGAAGATCAGATT469GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
NF084H06EC1F1058 Elicited cell culture Medicago truncatula cDNA clone NF084H06EC 5', mRNA sequence.
BF649847.1:464-485
AGAGAGTACGGTGGTTATGAAGATCAGATT464GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
NF086A09EC1F1067 Elicited cell culture Medicago truncatula cDNA clone NF086A09EC 5', mRNA sequence.
BF649965.1:470-491
GAGAGTACGGTGGTTATGAAGATCAGATTG470GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
NF102F04EC1F1041 Elicited cell culture Medicago truncatula cDNA clone NF102F04EC 5', mRNA sequence.
BF651212.1:472-493
AGAGAGTACGGTGGTTATGAAGATCAGATT472GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
NF052E11IN1F1085 Insect herbivory Medicago truncatula cDNA clone NF052E11IN 5', mRNA sequence.
BG449577.1:464-485
AGAGAGTACGGTGGTTATGAAGATCAGATT464GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
NF114C10PL1F1082 Phosphate starved leaf Medicago truncatula cDNA clone NF114C10PL 5', mRNA sequence.
BI264190.1:364-385
TCAGAGTACGGTGGTTATGAAGATCAGATT364GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
NF110H10IN1F1092 Insect herbivory Medicago truncatula cDNA clone NF110H10IN 5', mRNA sequence.
BI267627.1:468-489
AGAGAGTACGGTGGTTATGAAGATCAGATT468GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
NF006G06FL1F1052 Developing flower Medicago truncatula cDNA clone NF006G06FL 5', mRNA sequence.
BI270336.1:464-485
AGAGAGTACGGTGGTTATGAAGATCAGATT464GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
TZS542 TZS (Sapwood-heartwood transition zone of black locust - Summer) Robinia pseudoacacia cDNA, mRNA sequence.
BI642171.1:121-142
TCAGAGCACGGTGGTTTTGAAGATAAGATT121GCACTGTGACGGTTGCATTACGAAAATTCGAAGAATCATTCGCAAGTTCAAA
EST593031 BNIR Medicago truncatula/Meloidogyne incognita mixed EST library cDNA clone pBNIR-24A2, mRNA sequence.
BM814937.1:51-72
AGAGAGTACGGTGGTTATGAAGATCAGATT51GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
NF006B09PH1F1076 Phoma-infected Medicago truncatula cDNA clone NF006B09PH 5', mRNA sequence.
BQ138694.1:455-476
AGAGAGTACGGTGGTTATGAAGATCAGATT455GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
NF029A11PH1F1084 Phoma-infected Medicago truncatula cDNA clone NF029A11PH 5', mRNA sequence.
BQ140112.1:471-492
AGAGAGTACGGTGGTTATGAAGATCAGATT471GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
EST646659 HOGA Medicago truncatula cDNA clone HOGA-29C8, mRNA sequence.
CB893867.1:343-364
AGAGAGTACGGTGGTTATGAAGATCAGATT343GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
EST668680 MTUS Medicago truncatula cDNA clone MTUS-1H12, mRNA sequence.
CF067959.1:363-384
AGAGAGTACGGTGGTTATGAAGATCAGATT363GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
s13dNF0EC12MJ086_319697 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence.
CX533268.1:489-510
AGAGAGTACGGTGGTTATGAAGATCAGATT489GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
EST1226654 MTY Medicago truncatula cDNA clone MTYAW82, mRNA sequence.
DW017693.1:505-526
AGAGAGTACGGTGGTTATGAAGATCAGATT505GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
EST1226946 MTY Medicago truncatula cDNA clone MTYB078, mRNA sequence.
DW017985.1:504-525
AGAGAGTACGGTGGTTATGAAGATCAGATT504GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
MTYEF78TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence.
EV261117.1:497-518
AGAGAGTACGGTGGTTATGAAGATCAGATT497GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
META515TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
EY474408.1:551-572
AGAGAGTACGGTGGTTATGAAGATCAGATT551GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
METAR25TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
EY476424.1:551-572
AGAGAGTACGGTGGTTATGAAGATCAGATT551GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
METB513TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
EY477636.1:496-517
AGAGAGTACGGTGGTTATGAAGATCAGATT496GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
Trifolium repens mRNA, clone: WCC24l17_078, unspecified EST.
FY462635.1:481-502
AGAGAGTACGGTGGTTTTGAAGATCAGATT481GCACTGTGACGGTTGCATTACGAAAATTAAAAAAATCATTATGAAGTTCAAA
MEUBG62TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence.
GE348276.1:404-425
AGAGAGTACGGTGGTTATGAAGATCAGATT404GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
Ipa.ADAB-aac58f07.b1 IPA1-root Arachis ipaensis cDNA 5', mRNA sequence.
GW965622.1:64-85
AGAGAGCACGGTGGTTTTGAAGATCAGATT64GCACTGTGACGGTTGCATTACGAAAATTAGAAGAATCATCCAGAAGTTCAAC
TSA: Arachis stenosperma Astenosperma_small_c2684_1 mRNA sequence.
JR329024.1:95-116
AAGAGAGCACGGTGGTTTGAAGATCAGATT95GCACTGTGACGGTTGCATTACGAAAATTAGAAGAATCATCCAGAAGTTCAAC
TSA: Medicago truncatula Contig2581.Metrroot mRNA sequence.
JR371227.1:57-78
AGAGAGTACGGTGGTTATGAAGATCAGATT57GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
Medicago truncatula clone JCVI-FLMt-13E21 unknown mRNA.
BT136741.1:551-572
AGAGAGTACGGTGGTTATGAAGATCAGATT551GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
Medicago truncatula clone JCVI-FLMt-13N19 unknown mRNA.
BT145543.1:496-517
AGAGAGTACGGTGGTTATGAAGATCAGATT496GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
Medicago truncatula clone JCVI-FLMt-18E8 unknown mRNA.
BT149574.1:551-572
AGAGAGTACGGTGGTTATGAAGATCAGATT551GCACTGTGACGGTTGCATTACGAAAATTAAAAGAATCATTATGAAGTTCAAA
Arachis ipaensis cultivar K30076 chromosome 02.
CP049893.1:119833852-119833873
TCAGAGCACGGTGGTTTTGAAGATCAGATT119833852GCACTGTGACGGTTGCATTACGAAAATTAGAAGAATCATCCAGAAGTTCAAC
Trifolium repens isolate ACLI19 chromosome 01_Occ.
CP125836.1:20806004-20806025
TCAGAGTACGGTGGTTCTGAAGATCAGATT20806004GCACTGTGACGGTTGCATTACGAAAATTAAAAAAATCATTATGAAGTTCAAA
Trifolium repens isolate ACLI19 chromosome 01_Pall.
CP125837.1:21759644-21759665
TCAGAGTACGGTGGTTTTGAAGATCAGATT21759644GCACTGTGACGGTTGCATTACGAAAATTAAAAAAATCATTATGAAGTTCAAA

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