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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 21:01:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Raphanus sativus mRNA, clone: RSCS03F06, 5' end sequence.
FY446997.1:278-297
CTTACACTGGAGGAGGAGGAGGAGGATCTT278CGTACGACAAGCCTGTGAAATTCGATCAACCTTCTTATGGCGATTACGGC
Raphanus sativus mRNA, clone: RSCS09O21, 5' end sequence.
FY449273.1:545-564
CTTACACTGGAGGAGGAGGAGGAGGATCTT545CGTACGACAAGCCTGTGAAATTCGATCAACCTTCTTATGGCGATTACGGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_5353.
FX738162.1:616-635
CTTACACTGGAGGAGGAGGAGGAGGATCTT616CGTACGACAAGCCTGTGAAATTCGATCAACCTTCTTATGGCGATTACGGC
Raphanus sativus genome assembly, chromosome: 8.
OY743205.1:3678902-3678921
CTTACACTGGAGGAGGAGGAGGAGGATCTT3678902CGTACGACAAGCCTGTGAAATTCGATCAACCTTCTTATGGCGATTACGGC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_13131.
FX660884.1:1444-1463
GCCGTAATCGCCATAAGAAGGTTGATCGAA1444TTTCACAGGCTTGTCGTACGAAGATCCTCCTCCTCCTCCTCCAGTGTAAG
TSA: Raphanus sativus RS14864 mRNA sequence.
JT799411.1:1440-1459
GCCGTAATCGCCATAAGAAGGTTGATCGAA1440TTTCACAGGCTTGTCGTACGAAGATCCTCCTCCTCCTCCTCCAGTGTAAG
Raphanus sativus genome assembly, chromosome: 9.
LR778318.1:25215380-25215399
GCCGTAATCGCCATAAGAAGGTTGATCGAA25215380TTTCACAGGCTTGTCGTACGAAGATCCTCCTCCTCCTCCTCCAGTGTAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGTACGACAAGCCTGTGAAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGTACGACAAGCCTGTGAAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.847 | 0.839 | search_plus_done; http://172.18.8.135:50400/match?q=CGTACGACAAGCCTGTGAAA&k=0&no_gap=0&offset=0&limit=50
0.966 | 0.119 | search_minus_done; http://172.18.8.135:50400/match?q=TTTCACAGGCTTGTCGTACG&k=0&no_gap=0&offset=0&limit=46
0.969 | 0.002 | cgi_end;

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