GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 21:40:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38793236-38793255
TTTTCTCTAGCACGCGTGGGACAAACGTGA38793236CGTAGTGACCTTGGCTTTTTTCTTGAACACTATAGTAAACAAGAAAAAAG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2360295-2360314
ATTTTTTCTTGTTTACTATAGTGTTCAAGA2360295AAAAAGCCAAGGTCACTACGTCACGTTTGTCCCACGCGTGCTAGAGAAAA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2300693-2300712
TTTTTTCTTGTTTACTATAGTGTTCCAAGA2300693AAAAAGCCAAGGTCACTACGTCACGTTTGTCCCACGCGTGCTAGAGAAAA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2418065-2418084
ATTTTTTCTTGTTTACTATAGTGTTCAAGA2418065AAAAAGCCAAGGTCACTACGTCACGTTTGTCCCACGCGTGCTAGAGAAAA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:2522776-2522795
ATTTTTTCTTGTTTACTATAGTGTTCAAGA2522776AAAAAGCCAAGGTCACTACGTCACGTTTGTCCCACGCGTGCTAGAGAAAA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2309612-2309631
TTTTTTCTTGTTTACTATAGTGTTCCAAGA2309612AAAAAGCCAAGGTCACTACGTCACGTTTGTCCCACGCGTGCTAGAGAAAA
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2482920-2482939
TTTTTTCTTGTTTACTATAGTGTTCCAAGA2482920AAAAAGCCAAGGTCACTACGTCACGTTTGTCCCACGCGTGCTAGAGAAAA
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2475520-2475539
TTTTTTCTTGTTTACTATAGTGTTCCAAGA2475520AAAAAGCCAAGGTCACTACGTCACGTTTGTCCCACGCGTGCTAGAGAAAA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2531256-2531275
TTTTTTCTTGTTTACTATAGTGTTCCAAGA2531256AAAAAGCCAAGGTCACTACGTCACGTTTGTCCCACGCGTGCTAGAGAAAA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2566836-2566855
TTTTTTCTTGTTTACTATAGTGTTCCAAGA2566836AAAAAGCCAAGGTCACTACGTCACGTTTGTCCCACGCGTGCTAGAGAAAA
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2530360-2530379
TTTTTTCTTGTTTACTATAGTGTTCCAAGA2530360AAAAAGCCAAGGTCACTACGTCACGTTTGTCCCACGCGTGCTAGAGAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGTAGTGACCTTGGCTTTTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGTAGTGACCTTGGCTTTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.101 | 0.093 | search_plus_done; http://172.18.8.135:50400/match?q=CGTAGTGACCTTGGCTTTTT&k=0&no_gap=0&offset=0&limit=50
0.126 | 0.024 | search_minus_done; http://172.18.8.135:50400/match?q=AAAAAGCCAAGGTCACTACG&k=0&no_gap=0&offset=0&limit=49
0.132 | 0.006 | cgi_end;

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