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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 18:26:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RS1ET24TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD561887.1:371-390
CGTTGATAGAAGAGAGAAACCAAGACAGAG371CGTCGACAGAAGGGAGAAAGAGAAACCTCCCAAGGGTCAGTCCAAGAAGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_5892.
FX664195.1:1049-1068
CGTTGATAGAAGAGAGAAACCAAGACAGAG1049CGTCGACAGAAGGGAGAAAGAGAAACCTCCCAAGGGTCAGTCCAAGAAGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_4622.
FX739829.1:1044-1063
CGTTGATAGAAGAGAGAAACCAAGACAGAG1044CGTCGACAGAAGGGAGAAAGAGAAACCTCCCAAGGGTCAGTCCAAGAAGA
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:3240124-3240143
CGTTGATAGAAGAGAGAAACCAAGACAGAG3240124CGTCGACAGAAGGGAGAAAGAGAAACCTCCCAAGGGTCAGTCCAAGAAGA
RS1BO74JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EX891273.1:533-552
TCTTCTTGGACTGACCCTTGGGAGGTTTCT533CTTTCTCCCTTCTGTCGACGCTCTGTCTTGGTTTCTCTCTTCTATCAACG
Raphanus sativus mRNA, clone: RSCS01D12, 5' end sequence.
FY446276.1:429-448
TCTTCTTGGACTGACCCTTGGGAGGTTTCT429CTTTCTCCCTTCTGTCGACGCTCTGTCTTGGTTTCTCTCTTCTATCAACG
TSA: Raphanus sativus RS20788 mRNA sequence.
JT805335.1:204-223
TCTTCTTGGACTGACCCTTGGGAGGTTTCT204CTTTCTCCCTTCTGTCGACGCTCTGTCTTGGTTTCTCTCTTCTATCAACG
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:29739258-29739277
TCTTCTTGGACTGACCCTTGGGAGGTTTCT29739258CTTTCTCCCTTCTGTCGACGCTCTGTCTTGGTTTCTCTCTTCTATCAACG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGTCGACAGAAGGGAGAAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGTCGACAGAAGGGAGAAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.347 | 0.339 | search_plus_done; http://172.18.8.135:50400/match?q=CGTCGACAGAAGGGAGAAAG&k=0&no_gap=0&offset=0&limit=50
0.630 | 0.282 | search_minus_done; http://172.18.8.135:50400/match?q=CTTTCTCCCTTCTGTCGACG&k=0&no_gap=0&offset=0&limit=46
0.632 | 0.003 | cgi_end;

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