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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 21:24:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

68-E011127-021-005-G17-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022G175Q, mRNA sequence.
CX190177.1:144-165
AAAAATAATCCAAAACAATGTACTCTTCAT144CGTCTGTATCAAAACGCCTCCTTTTGATCCATGTCTTGGCCATACAACTTCT
65JKBNMO_UP_049_C10_17JUL2006_076 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL590811.1:638-659
AAAAATAATCCAAAACAATGTACTCTTCAT638CGTCTGTATCAAAACGCCTCCTTTTGATCCATGTCTTGGCCATACAACTTCT
0139261 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV149559.1:86-107
AAAAATAATCCAAAACAATGTACTCTTTAT86CGTCTGTATCAAAACGCCTCCTTTTGATCCATGTCTTGGCCATACAACTTCT
0139804 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV149883.1:90-111
AAAAATAATCCAAAACAATGTACTCTTTAT90CGTCTGTATCAAAACGCCTCCTTTTGATCCATGTCTTGGCCATACAACTTCT
0141470 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV151548.1:133-154
AAAAATAATCCAAAACAATGTACTCTTCAT133CGTCTGTATCAAAACGCCTCCTTTTGATCCATGTCTTGGCCATACAACTTCT
0083940 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV160078.1:101-122
AAAAATAATCCAAAACAATGTACTCTTCAT101CGTCTGTATCAAAACGCCTCCTTTTGATCCATGTCTTGGCCATACAACTTCT
RR2B376TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV538234.1:87-108
AAAAAGTATCCGCAACAATGTATATTTCAC87CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RR4BE16TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV569963.1:108-129
AAAAAGTATCCACAACAATGTATATGTCAC108CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RS1A205TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW713776.1:233-254
AAAAAGTATCCACAACAATGTATATGTCAC233CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RS1A205TV RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW713869.1:184-205
AAAAAGTATCCACAACAATGTATATGTCAC184CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RS2AF54TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW723886.1:99-120
AAAAAGTATCCACAACAATGTATATGTCAC99CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
BR030049 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-144G01 5', mRNA sequence.
EX045405.1:123-144
AAAAATAATCCAAAACAATGTACTCTTCAT123CGTCTGTATCAAAACGCCTCCTTTTGATCCATGTCTTGGCCATACAACTTCT
BR031332 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-008D05 5', mRNA sequence.
EX046688.1:145-166
AAAAATAATCCAAAACAATGTACTCTTCAT145CGTCTGTATCAAAACGCCTCCTTTTGATCCATGTCTTGGCCATACAACTTCT
BR032148 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-018G05 5', mRNA sequence.
EX047504.1:145-166
AAAAATAATCCAAAACAATGTACTCTTCAT145CGTCTGTATCAAAACGCCTCCTTTTGATCCATGTCTTGGCCATACAACTTCT
BR035157 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-061A04 5', mRNA sequence.
EX050513.1:145-166
AAAAATAATCCAAAACAATGTACTCTTCAT145CGTCTGTATCAAAACGCCTCCTTTTGATCCATGTCTTGGCCATACAACTTCT
BR077395 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-084A05 5', mRNA sequence.
EX091105.1:220-241
AAAAATAATCCAAAACAATGTACTCTTCAT220CGTCTGTATCAAAACGCCTCCTTTTGATCCATGTCTTGGCCATACAACTTCT
RR2CK82TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX757144.1:110-131
AAAAAGTATCCACAACAATGTATATGTCAC110CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RR1DI13TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY898287.1:107-128
AAAAAGTATCCACAACAATGTATATGTCAC107CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RR3D281TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY913078.1:106-127
AAAAAGTATCCACAACAATGTATATGTCAC106CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RR4DQ10TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY923365.1:109-130
AAAAAGTATCCACAACAATGTATATGTCAC109CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RR4E591TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY924750.1:109-130
AAAAAGTATCCACAACAATGTATATGTCAC109CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RS1DM28TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EY931443.1:109-130
AAAAAGTATCCACAACAATGTATATGTCAC109CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RS3E155TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EY949468.1:109-130
AAAAAGTATCCACAACAATGTATATGTCAC109CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RR3F494TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD550197.1:109-130
AAAAAGTATCCACAACAATGTATATGTCAC109CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RR3FM37TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD551568.1:110-131
AAAAAGTATCCACAACAATGTATATGTCAC110CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RS1EH15TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD560814.1:109-130
AAAAAGTATCCACAACAATGTATATGTCAC109CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RS2EX10TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD568968.1:107-128
AAAAAGTATCCACAACAATGTATATGTCAC107CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RS2FZ01TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD572162.1:109-130
AAAAAGTATCCACAACAATGTATATGTCAC109CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RS3FJ43TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD579986.1:107-128
AAAAAGTATCCACAACAATGTATATGTCAC107CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RS1G613TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD938729.1:109-130
AAAAAGTATCCACAACAATGTATATGTCAC109CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RS2H349TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD948845.1:109-130
AAAAAGTATCCACAACAATGTATATGTCAC109CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RS3H643TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD958346.1:139-160
AAAAAGTATCCACAACAATGTATATGTCAC139CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RR2H613TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD973824.1:107-128
AAAAAGTATCCACAACAATGTATATGTCAC107CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
BOMLY55TF BO_2_3_KB Brassica oleracea genomic clone BOMLY55, genomic survey sequence.
BH715740.1:316-337
AAAAATAATCCAAAACAATGTACTCTTCAT316CGTCTGTATCAAAACGCCTCCTTTTGATCCATGTCTTGGCCATACAACTTCT
BOIHB73TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIHB73, genomic survey sequence.
CC962836.1:144-165
AAAAATAATCCAAAACAATGTACTCTTCAT144CGTCTGTATCAAAACGCCTCCTTTTGATCCATGTCTTGGCCATACAACTTCT
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:17749613-17749634
AAAAATAATCCAAAACAATGTACTCTTCAT17749613CGTCTGTATCAAAACGCCTCCTTTTGATCCATGTCTTGGCCATACAACTTCT
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:8775103-8775124
AAAAACCATCCAAAACAATGTACTCTTCAT8775103CGTCTGTATCAAAACGCCTCCTTTTAATCCATGTCTTAGCCATGCAATTTCT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:6571267-6571288
AAAAAGTATCCACAACAATATATATGTCAC6571267CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:6571267-6571288
AAAAAGTATCCACAACAATATATATGTCAC6571267CGTCTGTATCAAAACGCCTCCTTTTGGTCCCTATCTTGGCTGTGGTGGCCAT
RS2EX10JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD573252.1:437-458
ATGGCCACCACAGCCAAGATAGGGACCAAA437AGGAGGCGTTTTGATACAGACGGTGACATATACATTGTTGTGGATACTTTTT
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:34426892-34426913
AGAAGTTGTATGGCCAAGACATGGATCAAA34426892AGGAGGCGTTTTGATACAGACGATGAAGAGTACATTGTTTTGGATTATTTTT
Brassica napus genome assembly, chromosome: A05.
HG994359.1:30679771-30679792
AGAAGTTGTATGGCCAAGACATGGATCAAA30679771AGGAGGCGTTTTGATACAGACGATGAAGAGTACATTGTTTTGGATTATTTTT
Brassica napus genome assembly, chromosome: C05.
HG994369.1:38764308-38764329
AGAAGTTGTATGGCCAAGACATGGATCAAA38764308AGGAGGCGTTTTGATACAGACGATGAAGAGTACATTGTTTTGGATTATTTTT
Brassica rapa genome, scaffold: A05.
LR031570.1:36781003-36781024
AGAAGTTGTATGGCCAAGACATGGATCAAA36781003AGGAGGCGTTTTGATACAGACGATGAAGAGTACATTGTTTTGGATTATCTCA
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:37310168-37310189
AGAAGTTGTATGGCCAAGACATGGATCAAA37310168AGGAGGCGTTTTGATACAGACGATGAAGAGTACATTGTTTTGGATTATTTTT
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:33460947-33460968
AGAAGTTGTATGGCCAAGACATGGATCAAA33460947AGGAGGCGTTTTGATACAGACGATGAAGAGTACATTGTTTTGGATTATTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGTCTGTATCAAAACGCCTCCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGTCTGTATCAAAACGCCTCCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.885 | 1.876 | search_plus_done; http://172.18.8.135:50400/match?q=CGTCTGTATCAAAACGCCTCCT&k=0&no_gap=0&offset=0&limit=50
2.020 | 0.136 | search_minus_done; http://172.18.8.135:50400/match?q=AGGAGGCGTTTTGATACAGACG&k=0&no_gap=0&offset=0&limit=11
2.025 | 0.005 | cgi_end;

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