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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

MAG: Phycisphaerales bacterium isolate bin470 chromosome.
CP070718.1:679974-679993
CGGTGGCGCTCTGAACGAATGATCAGGGTT679974CGTCTTCTTCGTTCTCGTCCTCCTCGGGCTTCTGCTCTCGCCACTTCTGG
Kazachstania bulderi strain CBS 8639 chromosome IX.
CP134434.1:619900-619919
CCCATTCACTTGGATCGACTTGTTCCTCAT619900CGTCTTCTTCGTTCTCGTCCTTCTTTGAGGTCTCTGGCTCGTTGTCCTTG
Parietaria judaica genome assembly, chromosome: 6.
OX940865.1:17841076-17841095
TCGAATGCCCAAATTGCCCCTCGCTCTCAT17841076CGTCTTCTTCGTTCTCGTCCTCCTCGTCTCTCCCGATCAACCAGTCCGCG
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:4477818-4477837
AGTGATGGTCGCCTGAGATATCTCTCTCAC4477818CGTCTTCTTCGTTCTCGTCCTCTCGTCGGTTGGTGCTGACGGGAGCTACT
Synechococcus sp. KORDI-49, complete genome.
CP006270.1:1689554-1689573
TGTGGTGGGCCCAGGCGGGCAGGTCGTCGT1689554CGTCTTCTTCGTTCTCGTCCGGCGTGCCAGCGGTGTCCGGGCTGGGGGCG
Neospora caninum Liverpool complete genome, chromosome IX.
FR823385.1:3255049-3255068
CCGCGTTTCCGTAAGTCATCAGCGTCGGCG3255049CGTCTTCTTCGTTCTCGTCCTGAAAAACGCATGCAGAACCAGGCCCGAAA
Volucella inanis genome assembly, chromosome: 4.
OU026156.1:54501693-54501712
CGTCGTCGCCGTCGTCGCCGTCGTCGCTAT54501693CGTCTTCTTCGTTCTCGTCCATGTCGTCGTCATCATCATCGTCATCGCTG
Chrysolina oricalcia genome assembly, chromosome: X.
OX101809.2:5596872-5596891
TGGCCGCGTTGCGCAGCGGGGTGATGGGCT5596872CGTCTTCTTCGTTCTCGTCCGACGAGGTGTTTTTCCTCTTCGAGGCTCTG
Sequence 3 from Patent WO2012175410.
JA900715.1:8558-8577
GTGGAATTTTTCAAAAAATTCTGTTTTTCA8558GGACGAGAACGAAGAAGACGCGCCGACGCTGATGAACTACGGCAACGCAG
Sequence 7 from Patent WO2012175410.
JA900719.1:8531-8550
GTGGAATTTTTCAAAAAATTCTGTTTTTCA8531GGACGAGAACGAAGAAGACGCGCCGACACTGATGAACTACGGCAACGCAG
Sequence 19 from Patent WO2012175410.
JA900731.1:7403-7422
TTTCGGGCCTGGTTCTGCATGCGTTTTTCA7403GGACGAGAACGAAGAAGACGCGCCGACGCTGATGACTTACGGAAACGCGG
TgESTzya93c11.y1 TgVEG Partially sporulated oocyst cDNA Toxoplasma gondii cDNA clone TgESTzya93c11.y1 5', mRNA sequence.
BM131343.1:66-85
ACCGGAACTGGGCTTCATCGAAGCCGAACA66GGACGAGAACGAAGAAGACGCGCCGACACTGATGAACTACGGCAACGCAG
NcEST3c75h02.y1 Nc-1 Tachyzoite cDNA Library Neospora caninum cDNA 5', mRNA sequence.
CF798080.1:50-69
ACCCGAACTCGGATTCATCGAGGCCGAACA50GGACGAGAACGAAGAAGACGCGCCGACGCTGATGACTTACGGAAACGCGG
PMrpct_4349 mating of 88069 (A1) and 618 (A2) Phytophthora infestans cDNA, mRNA sequence.
CV941792.1:408-427
AGCTGGGACAATGACAATAAAAAGCGATAG408GGACGAGAACGAAGAAGACGAAAGCGGGTGGATGTCTTGCGTGTTTGCAA
Raphanus sativus mRNA, clone: RSCS03P22, 5' end sequence.
FY447230.1:542-561
AGTAGCTCCCGTCAGCACCAACCGACGAGA542GGACGAGAACGAAGAAGACGGTGAGAGAGATATCTCAGGCGACCATCACT
Raphanus sativus mRNA, clone: RSCS10K07, 5' end sequence.
FY449529.1:337-356
AGTAGCTCCCGTCAGCACCAACCGACGAGA337GGACGAGAACGAAGAAGACGGTGAGAGAGATATCTCAGGCGACCATCACT
Raphanus sativus mRNA, clone: RSCS18I19, 5' end sequence.
FY452349.1:552-571
AGTAGCTCCCGTCAGCACCAACCGACGAGA552GGACGAGAACGAAGAAGACGGTGAGAGAGATATCTCAGGCGACCATCACT
TSA: Anopheles funestus Afun009807 mRNA sequence.
EZ975835.1:419-438
AGATATCAAGAAACAAATGCCAACCTTACT419GGACGAGAACGAAGAAGACGCATCATCCGGTGCGGGAAAATCATCTTCAA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_11317.
FX665892.1:425-444
AGTAGCTCCCGTCAGCACCAACCGACGAGA425GGACGAGAACGAAGAAGACGGTGAGAGAGATATCTCAGGCGACCATCACT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_54788.
FX792510.1:484-503
AGTAGCTCCCGTCAGCACCAACCGACGAGA484GGACGAGAACGAAGAAGACGGTGAGAGAGATATCTCAGGCGACCATCACT
TSA: Nitella mirabilis comp38293_c0_seq1 mRNA sequence.
JV796243.1:227-246
CTACCGGCGCAGCAGCATGCACACGTGGCA227GGACGAGAACGAAGAAGACGGGAGGACGCAGAAAGAGGACGAAGCGCTGC
Kazachstania bulderi strain NRRL Y-27205 chromosome IX.
CP134422.1:142500-142519
CAAGGACAACGAGCCAGAGACCTCAAAGAA142500GGACGAGAACGAAGAAGACGATGAGGAACAAGTCGATCCAAGTGAATGGG
Kazachstania bulderi strain CBS 8638 chromosome IX.
CP134446.1:119247-119266
CAAGGACAACGAGCCAGAGACCTCAAAGAA119247GGACGAGAACGAAGAAGACGATGAGGAACAAGTCGATCCAAGTGAATGGG
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:28501564-28501583
AGTAGCTCCCGTCAGCACCAACCGACGAGA28501564GGACGAGAACGAAGAAGACGGTGAGAGAGATATCTCAGGCGACCATCACT
Aegilops speltoides subsp. speltoides genome assembly, chromosome: 4B.
OX082600.1:142868186-142868205
CCCCCCCTTTAACATGCAAGCGGTTTGCAT142868186GGACGAGAACGAAGAAGACGTCGCGGAGGCCTCGCCGGAGGTTGCTCCCT
Misopates orontium genome assembly, chromosome: 1.
OX326946.1:6535178-6535197
TTGATTTGATGTCGGCGGTTGCGGGGTGGT6535178GGACGAGAACGAAGAAGACGAGTCTTTTCTATCTTTACTTTTATTTTGTT
Parietaria judaica genome assembly, chromosome: 5.
OX940864.1:14208620-14208639
GTCGGAGATCTGGTTGATCGGGAGAGAGGA14208620GGACGAGAACGAAGAAGACGATGAGAGCGAGGGGCAATTTGGGCATTCGA
Inga oerstediana genome assembly, chromosome: 5.
OY723403.1:18774102-18774121
TTGTCACTGGTGACTTTATCACAAGCTAAA18774102GGACGAGAACGAAGAAGACGAGGGAGGAAGAGAGGAGAGGGAGATAGGAG
Neisseria macacae ATCC 33926 chromosome, complete genome.
CP094241.1:2395403-2395422
AGACGAGATATACGGCTTGGTACAGGACGA2395403GGACGAGAACGAAGAAGACGAAGAAGACGAAGTATGGGATGCTGTAGACG
Anoplius nigerrimus genome assembly, chromosome: 7.
OU612083.1:10404155-10404174
TGATATTGATGATAATGATGATGAAGAGGA10404155GGACGAGAACGAAGAAGACGAGGTGCATGCGGTGGTAGATGAAGACGACG
Anopheles funestus genome assembly, chromosome: 2.
OX030923.1:71396029-71396048
TTCCTTTCAGAAACAAATGCCAACCTTACT71396029GGACGAGAACGAAGAAGACGCATCATCCGGTGCGGGAAAATCATCTTCAA
Netelia dilatata genome assembly, chromosome: 4.
OX328014.1:15457604-15457623
TGCTCGTGATATCAACGAGGCATTGCAGAT15457604GGACGAGAACGAAGAAGACGAGGAGGAGAGTCCACACGAGATCGTCAAAA
Coelioxys conoideus genome assembly, chromosome: 9.
OX392457.1:12158683-12158702
GTGGGCATTTGTCGGCGACAACAACCCAGT12158683GGACGAGAACGAAGAAGACGAGCGAACCACGAAAGAAAGATACATCGAAT
Orthonevra nobilis genome assembly, chromosome: 1.
OY743224.1:31872290-31872309
CTCGCGTCCTTTGACATATATTTCTCTTGG31872290GGACGAGAACGAAGAAGACGAAGAAGTACTTACCCCAAACCATTTCTTGA
Priocnemis perturbator genome assembly, chromosome: 9.
OZ012651.1:10014510-10014529
GAAGCGATTCGAGCAGGTTGAAGAAGACGA10014510GGACGAGAACGAAGAAGACGAGGAGAGCGAGGACGAAGTTGTTCGGTGAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGTCTTCTTCGTTCTCGTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGTCTTCTTCGTTCTCGTCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.196 | 0.187 | search_plus_done; http://172.18.8.135:50400/match?q=CGTCTTCTTCGTTCTCGTCC&k=0&no_gap=0&offset=0&limit=50
0.867 | 0.671 | search_minus_done; http://172.18.8.135:50400/match?q=GGACGAGAACGAAGAAGACG&k=0&no_gap=0&offset=0&limit=42
0.885 | 0.018 | cgi_end;

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