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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:59:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Lotus japonicus DNA, clone:LjT58b07_not.
AG263516.1:316-335
GTTATGCCTCTGAAGGAGGAAGTCTTCAAT316CGTGGGTCTGGGTTGTATAGAGAGAGAGAGAGAGA
Lotus japonicus B-129 DNA, chromosome 5, complete sequence.
AP022633.1:56556707-56556726
GTTATGCCACTGAAGGAGGAAGTCTTCAAT56556707CGTGGGTCTGGGTTGTATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 2.
CP125974.1:310210803-310210822
TTTAAATTGTACATGCTTGCATACATATCT310210803CGTGGGTCTGGGTTGTATAGTCGATTCACCTTATAATTGAATATGGAGAC
Avena insularis genome assembly, chromosome: 3C.
OU342340.1:463254028-463254047
ATCAATTATACATGCTTGCATACATATCTT463254028CGTGGGTCTGGGTTGTATAGTCGAATCACATCATAATTAGATATGGAGAC
Avena insularis genome assembly, chromosome: 3C.
OU342340.1:522919304-522919323
TATCATTTATACATGCTTGCATACATATTT522919304CGTGGGTCTGGGTTGTATAGTCGAATCACATCATAATTAAATATGGAGTA
Avena insularis genome assembly, chromosome: 6C.
OU342343.1:294089-294108
TATCAATTATACCTGCTTGCATACATATTT294089CGTGGGTCTGGGTTGTATAGTCGAATCACATCATAATTAAATATGGAGAC
Avena insularis genome assembly, chromosome: 6C.
OU342343.1:389302694-389302713
TATCAAATGTACATGCTTGCATACATATTT389302694CGTGGGTCTGGGTTGTATAGTCGTTTCACCTCATAATTAAATACGGAGTG
Avena insularis genome assembly, chromosome: 3D.
OU342347.1:133169184-133169203
ATCAAATTGTACATGCTTGCATACATATTT133169184CGTGGGTCTGGGTTGTATAGTCGATTCACCTCATAATTAAATATGTATAC
Avena insularis genome assembly, chromosome: 4D.
OU342348.1:460819013-460819032
TTTAAATTGTACATGCTTGCATACATATTT460819013CGTGGGTCTGGGTTGTATAGTCGATTCACCTCGTAATTAAATATGGAGAC
Avena insularis genome assembly, chromosome: 7D.
OU342351.1:321573259-321573278
ATTAAATTGTACATGCTTGCATACACATTT321573259CGTGGGTCTGGGTTGTATAGTCGATTCACCTCATAATTAAATATGGAGAC
Avena sativa genome assembly, chromosome: 3C.
OU342387.1:344134801-344134820
TATCAATTGTACATGCTTGCATACATATTT344134801CGTGGGTCTGGGTTGTATAGTCCATTCACCTCATAATTAAATATGGAGAC
Avena sativa genome assembly, chromosome: 3C.
OU342387.1:491026202-491026221
ATCAATTATACATGATTGCATACATATCTT491026202CGTGGGTCTGGGTTGTATAGTCGAATCACATCATAATTAGATATGGAGAC
Avena sativa genome assembly, chromosome: 5C.
OU342389.1:5292965-5292984
TATCATTTATACATGCTTGCATACATATTT5292965CGTGGGTCTGGGTTGTATAGTCGAATCACATCATAATTAAATATGGAGTA
Avena sativa genome assembly, chromosome: 5C.
OU342389.1:548583121-548583140
TATCAATTATACCTGATTGCATACATATTT548583121CGTGGGTCTGGGTTGTATAGTCGAATCACATGATAATTAAATATGGAGTC
Avena sativa genome assembly, chromosome: 3D.
OU342394.1:120061770-120061789
ATCAAATTGTACATGCTTGCATACATATTT120061770CGTGGGTCTGGGTTGTATAGTCGATTCACCTCATAATTAAATATGTATAC
Avena atlantica genome assembly, chromosome: 1A.
OU342733.1:214857242-214857261
TTTAAATTGTACATGCTTGCATACATATCT214857242CGTGGGTCTGGGTTGTATAGTCGATTCACCTTATAATTGAATATGGAGAC
Avena atlantica genome assembly, chromosome: 1A.
OU342733.1:266376234-266376253
ATTAAATTGTACAAGATTTCATACATATTT266376234CGTGGGTCTGGGTTGTATAGTCGATTCATCTCATAATTAAATATTGATAC
Avena eriantha genome assembly, chromosome: 2C.
OU342741.1:21883259-21883278
TATCAATTATACATGCTTCCATACATATTT21883259CGTGGGTCTGGGTTGTATAGTCGAATCACATCATAATTAAATATGGAGTC
Avena eriantha genome assembly, chromosome: 5C.
OU342744.1:267024337-267024356
ATCAATTATACATGCTTGCATACATACCTT267024337CGTGGGTCTGGGTTGTATAGTCGAATCACATCATAATTAGATATGGAGAC
Avena eriantha genome assembly, chromosome: 5C.
OU342744.1:284051150-284051169
TATCAATTATACATGCTTGCATACATATTT284051150CGTGGGTCTGGGTTGTATAGTCGAATCACATCATAATTAAATATGGAGTC
Avena eriantha genome assembly, chromosome: 6C.
OU342745.1:198506036-198506055
TATCAATCATACATGCTTGCATACATATTT198506036CGTGGGTCTGGGTTGTATAGTCGAATCACATCATAATTAAATATGGAGTC
Avena eriantha genome assembly, chromosome: 6C.
OU342745.1:198511077-198511096
TATCAATCATACATGCTTGCATACATATTT198511077CGTGGGTCTGGGTTGTATAGTCGAATCACATCATAATTAAATATGGAGTC
Avena eriantha genome assembly, chromosome: 7C.
OU342746.1:286243701-286243720
TATCAATTATACATGCTTGCATACATATTT286243701CGTGGGTCTGGGTTGTATAGTAGAATCACATCATAATTAAATATGGAGTC
Avena eriantha genome assembly, chromosome: 7C.
OU342746.1:416512292-416512311
ATCAATAATACATGCTTGCATACATATCTT416512292CGTGGGTCTGGGTTGTATAGTCGAATCACATCATAAGTAGATATGGAGAC
Avena longiglumis genome assembly, chromosome: 1A.
OU342747.1:218415529-218415548
TTTAAATTGTACATGCTTGCATACATATCT218415529CGTGGGTCTGGGTTGTATAGTCGATTCACCTTATAATTGAATATGGAGAC
Avena sativa genome assembly, chromosome: 10.
OV702288.1:388961457-388961476
TATCAATTGTACATGCTTGCATACATATTT388961457CGTGGGTCTGGGTTGTATAGTCCATTCACCTCATAATTAAATATGGAGAC
Avena sativa genome assembly, chromosome: 10.
OV702288.1:554777267-554777286
ATCAATTATACATGATTGCATACATATCTT554777267CGTGGGTCTGGGTTGTATAGTCGAATCACATCATAATTAGATATGGAGAC
Avena sativa genome assembly, chromosome: 12.
OV702290.1:2005919-2005938
TATCATTTATACATGCTTGCATACATATTT2005919CGTGGGTCTGGGTTGTATAGTCGAATCACATCATAATTAAATATGGAGTA
Avena sativa genome assembly, chromosome: 12.
OV702290.1:584523001-584523020
TATCAATTATACCTGATTGCATACATATTT584523001CGTGGGTCTGGGTTGTATAGTCGAATCACATGATAATTAAATATGGAGTC
Avena sativa genome assembly, chromosome: 13.
OV702291.1:429133007-429133026
TATCAAATGTACATGCTTGCATACATATTT429133007CGTGGGTCTGGGTTGTATAGTCGTTTCACCTCATAATTAAATACGGAGTG
Avena sativa genome assembly, chromosome: 13.
OV702291.1:433144534-433144553
TATCAATTATACATGCTTGCATACATATTT433144534CGTGGGTCTGGGTTGTATAGTCGAATCACATCATAATTAAATATAGAGAC
Avena sativa genome assembly, chromosome: 17.
OV702295.1:136140976-136140995
ATCAAATTGTACATGCTTGCATACATATTT136140976CGTGGGTCTGGGTTGTATAGTCGATTCACCTCATAATTAAATATGTATAC
Sepiola atlantica genome assembly, chromosome: 12.
OY744526.1:116101857-116101876
GTCTAAGAATATATTATGGTATCTAAACCA116101857CGTGGGTCTGGGTTGTATAGATACTTAAGAAACTCAACAAGACCATCGAG
Lotus japonicus genomic DNA, chromosome 5, clone: LjB21K15, BM1817.
AP010526.1:7734-7753
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT7734CTATACAACCCAGACCCACGATTGAAGACTTCCTCCTTCAGAGGCATAAC
Lotus japonicus genomic DNA, chromosome 5, clone: LjT135A04, TM1816.
AP010527.1:43384-43403
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT43384CTATACAACCCAGACCCACGATTGAAGACTTCCTCCTTCAGAGGCATAAC
UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 2.
CP125974.1:40663392-40663411
GTCTCCATATTCAATTATAAGTTGAATCGA40663392CTATACAACCCAGACCCACGAGATATGTATGCAAGCATGTACAATTTAAA
UNVERIFIED_CONTAM: Avena longiglumis isolate 447 chromosome 2.
CP125974.1:352857751-352857770
GTATCAATATTTAATTATGAGATGAATCGA352857751CTATACAACCCAGACCCACGAAATATGTATGCAATCTTGTACAATTTAAT
Avena insularis genome assembly, chromosome: 3C.
OU342340.1:171560209-171560228
GACTCCATATTTAATTATGATGTGATTCGA171560209CTATACAACCCAGACCCACGAAATATGTATGCAAGCATGTATAATTGATA
Avena insularis genome assembly, chromosome: 4C.
OU342341.1:223393751-223393770
AGACTCCATATTGAATTATGATGTGATTCA223393751CTATACAACCCAGACCCACGAAATATGTATGCAAGTATGTATAATTGATA
Avena insularis genome assembly, chromosome: 4C.
OU342341.1:469974219-469974238
TAGCCTCCATATTTAATTTAAGTGAATCAA469974219CTATACAACCCAGACCCACGAAATATGTATGCAAGCATGAATGATTTAAT
Avena insularis genome assembly, chromosome: 5C.
OU342342.1:77823359-77823378
GCATATAGACTCCGTATTTAATTATGCCGA77823359CTATACAACCCAGACCCACGAAAAATGTATGCAAGCATGTATAATTGATA
Avena insularis genome assembly, chromosome: 6C.
OU342343.1:400304598-400304617
GTCTCCATATTTAATTATGAGGTGAACCGA400304598CTATACAACCCAGACCCACGAAATATGTATGCAAGCATGTATAATTGATA
Avena insularis genome assembly, chromosome: 6C.
OU342343.1:443670086-443670105
CGCTCCATATTTAATTATGAGGTGAAACGA443670086CTATACAACCCAGACCCACGAAATATGTATGCAAGCATGTACAATTGATA
Avena insularis genome assembly, chromosome: 1D.
OU342345.1:129738203-129738222
GTCTCCATATTCAATTATAAGGTGAATCGA129738203CTATACAACCCAGACCCACGAGATATGTATGCAAGCATGTACAATTTAAA
Avena insularis genome assembly, chromosome: 2D.
OU342346.1:27409463-27409482
GTCTCCATATTTAATTATGAGGTGAATCGA27409463CTATACAACCCAGACCCACGAAATATGTATGCAAGCATGTACAATTTGAT
Avena insularis genome assembly, chromosome: 3D.
OU342347.1:167862081-167862100
GTCTCCGTATTTAATTATGAGGTGAATCGA167862081CTATACAACCCAGACCCACGAAATATGTATGCAAGAATGTACAATTTGAT
Avena sativa genome assembly, chromosome: 1A.
OU342378.1:141849757-141849776
GTCTCCATATTCAATTATAAGGTGAATCGA141849757CTATACAACCCAGACCCACGAGATATGTATGCAAGCATGTACAATTTAAA
Avena sativa genome assembly, chromosome: 1A.
OU342378.1:177448754-177448773
GTATCAATATTTAATTATGAGATGAATCGA177448754CTATACAACCCAGACCCACGAAATATGTATGCAATCTTGTACAATTTAAT
Avena sativa genome assembly, chromosome: 3C.
OU342387.1:361859606-361859625
GACTCCATATTTAATTATGATGTGATTCGA361859606CTATACAACCCAGACCCACGAAATATGTATGCAAGCATGTATAATTGATA
Avena sativa genome assembly, chromosome: 4C.
OU342388.1:510117100-510117119
TAGCCTCCATATTTAATTTAAGTGAATCAA510117100CTATACAACCCAGACCCACGAAATATGTATGCAAGCATGAATGATTTAAT
Avena sativa genome assembly, chromosome: 5C.
OU342389.1:67005419-67005438
GCATATAGACTCCGTATTTAATTATGCCGA67005419CTATACAACCCAGACCCACGAAAAATGTATGCAAGCATGTATAATTGATA
Avena sativa genome assembly, chromosome: 6C.
OU342390.1:5189423-5189442
GTCTCCATATTTAATTATGATGTGATTCGA5189423CTATACAACCCAGACCCACGAAATATGTATGCAAGCAGGTATAATTGATA
Avena sativa genome assembly, chromosome: 6C.
OU342390.1:396032374-396032393
CACTCCGTATTTAATTATGAGGTGAAACGA396032374CTATACAACCCAGACCCACGAAATATGTATGCAAGCATGTACATTTGATA
Avena sativa genome assembly, chromosome: 6C.
OU342390.1:417832673-417832692
GTCTCCATATTTAATTATGAGGTGAACCGA417832673CTATACAACCCAGACCCACGAAATATGTATGCAAGCATGTATAATTGATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGTGGGTCTGGGTTGTATAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGTGGGTCTGGGTTGTATAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.105 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=CGTGGGTCTGGGTTGTATAG&k=0&no_gap=0&offset=0&limit=50
0.152 | 0.047 | search_minus_done; http://172.18.8.135:50400/match?q=CTATACAACCCAGACCCACG&k=0&no_gap=0&offset=0&limit=17
0.166 | 0.014 | cgi_end;

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