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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:20:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Trifolium subterraneum genome assembly, chromosome: 4.
OX637464.1:4374518-4374537
TAAAAATGAAAGAGGGGCATAAAAAAGTAC4374518CGTGGTGAGGTTTTGAAGATGCTCCAAGAGATTAGGTTGATTTGAATCTG
Trifolium dubium genome assembly, chromosome: 2.
OX638063.1:55957971-55957990
AAAAATTAAAGAGGGGGATAAAAAAAATAC55957971CGTGGTGAGGTTTTGAAGATGATTCAAGATATTAGATTGATTTGTATCGG
Trifolium repens mRNA, clone: WCC03p08_032, unspecified EST.
FY455348.1:389-408
CAGATTCAAATCAACCTAATCTCTTGGAGC389ATCTTCAAAACCTCACCACGGGTGGTGGTGAGGAATTGCTTAGAGAGCTA
Trifolium repens mRNA, clone: WCT4_11, unspecified EST.
FY469754.1:304-323
CAGATTCAAATCAACCTAATCTCTTGGAGC304ATCTTCAAAACCTCACCACGGGTGGTGGTGAGGAATTACTGAGAGAGCTA
Trifolium repens isolate ACLI19 chromosome 08_0cc.
CP125850.1:60194515-60194534
CAGATTCAAATCAACCTAATCTATTGGAGC60194515ATCTTCAAAACCTCACCACGGTACTTTTTTATGCCCCTCTTTGATTTTTA
Trifolium repens isolate ACLI19 chromosome 08_Pall.
CP125851.1:52683120-52683139
CAGATTCAAATCAACCTAATCTCTTGGAGC52683120ATCTTCAAAACCTCACCACGGTATTTTTTTTAATCCCCTCTTTCATTTTT
Sambucus nigra genome assembly, chromosome: 10.
OX422216.1:441215589-441215608
CACGAGGGTACCAATTTAGTGAAAGCTTCA441215589ATCTTCAAAACCTCACCACGAAGTTTGAGACTATTACCATTCTAGATTCT
Sambucus nigra genome assembly, chromosome: 14.
OX422220.1:129023729-129023748
ATAAGGGTACCAACGCTGTGAAACCTTCCA129023729ATCTTCAAAACCTCACCACGTAGTTTTAGACTATTACCGTGAATGATCCT
Trifolium fragiferum genome assembly, chromosome: 4.
OX940792.1:58093997-58094016
CAGATTCAAATCAACCTAATCTATTGGAGC58093997ATCTTCAAAACCTCACCACGGTACTTTTTTATGCCTCTCTTTTGATTTTT
Hordeum bulbosum genome assembly, chromosome: 2H_1.
OY737410.1:208471484-208471503
TGCAAACTGTGTTGCATCAGCTATTTGGGG208471484ATCTTCAAAACCTCACCACGCCGGCCCCCGACGTGGAGACGTCAGACTCC
Hordeum bulbosum genome assembly, chromosome: 2H_2.
OY737417.1:210052885-210052904
TGCAAACTGTGTTGCATCAGCTATTTGGGG210052885ATCTTCAAAACCTCACCACGCCGGCCCCCGACGTGGAGACGTCAGACTCC
Lacanobia wlatinum genome assembly, chromosome: 12.
OX388034.1:6206670-6206689
GGGCGCCGGCAGGACTATTTTTGGGGATGC6206670ATCTTCAAAACCTCACCACGAATAGGATAACTTTCCTATTGCCCATTCAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGTGGTGAGGTTTTGAAGAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGTGGTGAGGTTTTGAAGAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.171 | 0.162 | search_plus_done; http://172.18.8.135:50400/match?q=CGTGGTGAGGTTTTGAAGAT&k=0&no_gap=0&offset=0&limit=50
0.414 | 0.243 | search_minus_done; http://172.18.8.135:50400/match?q=ATCTTCAAAACCTCACCACG&k=0&no_gap=0&offset=0&limit=48
0.421 | 0.007 | cgi_end;

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