GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 13:37:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sparus aurata genome assembly, chromosome: 6.
LR537126.1:12161412-12161431
CACCTTAATCCCTCTCTGTGTATCTAACCC12161412CGTGTCTCCCTTCACTCCTCGTGGTCCGTCTGTCCGGCCTCGTCCTCATG
Arachis hypogaea DNA, clone: SAAC0708O17.
DH962709.1:172-191
GGCAGCGGCAGAAGCGGCGGTGGCTGGGCG172CGTGTCTCCCTTCACTCCTCTGCTCCTCATACTCTCTCTCTCTCTCTCTC
SPRI_011 Enriched peanut library for SSRs Arachis glabrata x Arachis hypogaea genomic clone ctw_20, genomic survey sequence.
DU132282.1:314-333
GGCAGTAGCAGAAGCGGCGGTGGCTGGGCG314CGTGTCTCCCTTCACTCCTCTGCTCCTCGTGCTCTCTCTTTCTCTCTCTC
Arachis hypogaea cultivar Shitouqi chromosome B01.
CP030993.1:65204505-65204524
GGCAGCGGCAGAAGCGGCGGTGGCTGGGCG65204505CGTGTCTCCCTTCACTCCTCTGCTCCTCATACTCTCTCTCTCTCTCTCTC
Arachis hypogaea cultivar Shitouqi chromosome B04.
CP030996.1:108977139-108977158
GGCAGTGGCAGAAGCGGCGGTGGCTGGGCG108977139CGTGTCTCCCTTCACTCCTCTGCTCCTCGTGCTCTCTCTTTCTCTCTCTC
Arachis ipaensis cultivar K30076 chromosome 01.
CP049892.1:66075509-66075528
GGCAGCGGCAGAAGCGGCGGTGGCTGGGCG66075509CGTGTCTCCCTTCACTCCTCTGCTCCTCATACTCTCTCTCTCTCTCTCTC
Arachis ipaensis cultivar K30076 chromosome 04.
CP049895.1:121788620-121788639
GGCAGTGGCAGAAGCGGCGGTGGCTGGGCG121788620CGTGTCTCCCTTCACTCCTCTGCTCCTCGTGCTCTCTCTTTCTCTCTCTC
Octopus vulgaris genome assembly, chromosome: 2.
OX597815.1:132805266-132805285
AATAACGGAACTGCTGATACAATATCCTTA132805266CGTGTCTCCCTTCACTCCTCCACTTCACTCTGTATTTCATATCTTCTCCA
Arachis hypogaea DNA, clone: AHGS43M02.
DH961699.1:158-177
GAGAGAGAGAGAGAGAGAGTATGAGGAGCA158GAGGAGTGAAGGGAGACACGCGCCCAGCCACCGCCGCTTCTGCCGCTGCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGTGTCTCCCTTCACTCCTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGTGTCTCCCTTCACTCCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.156 | 0.147 | search_plus_done; http://172.18.8.135:50400/match?q=CGTGTCTCCCTTCACTCCTC&k=0&no_gap=0&offset=0&limit=50
0.200 | 0.044 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGAGTGAAGGGAGACACG&k=0&no_gap=0&offset=0&limit=42
0.201 | 0.001 | cgi_end;

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