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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 08:56:23, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 348 from patent US 8426682.
GZ836129.1:743-762
ACTACTACTACTACTACTTGTGTGAAACAT743CGTGTGTATGTGTTGGTTCCTCTTCTTTGCCTAATGCAGACTCTGTTTGT
Sequence 359 from patent US 8426682.
GZ836140.1:1000-1019
ACTACTACTACAACTACTTGTGTGAAACAT1000CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 370 from patent US 8426682.
GZ836151.1:1003-1022
ACTACTACTACTACTACTTGTGTGAAACAT1003CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 401 from patent US 8426682.
GZ836182.1:1023-1042
ATGTACTATACTAGTACTTGTGTGAAACAT1023CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 348 from Patent WO2009083958.
HB465627.1:743-762
ACTACTACTACTACTACTTGTGTGAAACAT743CGTGTGTATGTGTTGGTTCCTCTTCTTTGCCTAATGCAGACTCTGTTTGT
Sequence 359 from Patent WO2009083958.
HB465638.1:1000-1019
ACTACTACTACAACTACTTGTGTGAAACAT1000CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 370 from Patent WO2009083958.
HB465649.1:1003-1022
ACTACTACTACTACTACTTGTGTGAAACAT1003CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 401 from Patent WO2009083958.
HB465680.1:1023-1042
ATGTACTATACTAGTACTTGTGTGAAACAT1023CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 348 from patent US 9670501.
KH775769.1:743-762
ACTACTACTACTACTACTTGTGTGAAACAT743CGTGTGTATGTGTTGGTTCCTCTTCTTTGCCTAATGCAGACTCTGTTTGT
Sequence 359 from patent US 9670501.
KH775780.1:1000-1019
ACTACTACTACAACTACTTGTGTGAAACAT1000CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 370 from patent US 9670501.
KH775791.1:1003-1022
ACTACTACTACTACTACTTGTGTGAAACAT1003CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 401 from patent US 9670501.
KH775822.1:1023-1042
ATGTACTATACTAGTACTTGTGTGAAACAT1023CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 348 from patent US 10407690.
MO361931.1:743-762
ACTACTACTACTACTACTTGTGTGAAACAT743CGTGTGTATGTGTTGGTTCCTCTTCTTTGCCTAATGCAGACTCTGTTTGT
Sequence 359 from patent US 10407690.
MO361942.1:1000-1019
ACTACTACTACAACTACTTGTGTGAAACAT1000CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 370 from patent US 10407690.
MO361953.1:1003-1022
ACTACTACTACTACTACTTGTGTGAAACAT1003CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Sequence 401 from patent US 10407690.
MO361984.1:1023-1042
ATGTACTATACTAGTACTTGTGTGAAACAT1023CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a008H02_SP6.
AM058559.1:309-328
ACTACTACTACAACTACTTGTGTGAAACAT309CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a013B23_SP6.
AM059810.1:168-187
ACTACTACTACAACTACTTGTGTGAAACAT168CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a019A03_SP6.
AM061500.1:301-320
ACTACTACTACAACTACTTGTGTGAAACAT301CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
HC0625 GIBCOBRL CAT. NO. 19643-014 Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
CA992158.1:518-537
ACTACTACTACTACTACTTGTGTGAAACAT518CGTGTGTATGTGTTGGTTCCTCTCTTTTGCCTAATGCA
Brassica oleracea var. viridis mRNA, clone: KALE-016C15, 3' end sequence.
DK521343.1:677-696
ATGTACTATACTAGTACTTGTGTGAAACAT677CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
HC1249 GIBCOBRL CAT. NO. 19643-014 Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN191436.1:141-160
ACTACTACTACTACTACTTGTGTGAAACAT141CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
HC1580 GIBCOBRL CAT. NO. 19643-014 Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN192520.1:385-404
ACTACTACTACTACTACTTGTGTGAAACAT385CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNSCSICT_UP_029_C02_22DEC2004_012 Brassica napus seed coat BNSCSICT Brassica napus cDNA 5', mRNA sequence.
DY011649.1:705-724
ATGTACTATACTAGTACTTGTGTGAAACAT705CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCTAAT
15ACDHYS_UP_016_C02_14OCT2004_012 Brassica napus 15ACDHYS Brassica napus cDNA 5', mRNA sequence.
EE401318.1:415-434
ATGTACTATACTAGTACTTGTGTGAAACAT415CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNSCS3CT_UP_015_E12_10JAN2005_088 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE466157.1:412-431
ATGTACTATACTAGTACTTGTGTGAAACAT412CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNSCS3CT_UP_020_C08_11JAN2005_060 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE466527.1:418-437
ATGTACTATACTAGTACTTGTGTGAAACAT418CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNSCS3CT_UP_031_B11_12JAN2005_093 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE467302.1:465-484
ATGTACTATACTAGTACTTGTGTGAAACAT465CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNSCS4CT_UP_029_A01_19JAN2005_015 Brassica napus seed coat BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EE469819.1:186-205
ATGTACTATACTAGTACTTGTGTGAAACAT186CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNQA_UP_075_D09_31MAY2005_073 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
EE552520.1:187-206
ATGTACTATACTAGTACTTGTGTGAAACAT187CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNQA_UP_093_G02_01JUN2005_004 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
EE553628.1:15-34
CTTGTGTGAAACAT15CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
OL2369R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL2369, mRNA sequence.
EH416481.1:539-558
ACTACTACTACAACTACTTGTGTGAAACAT539CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
OL2926R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL2926, mRNA sequence.
EH417606.1:520-539
ACTACTACTACAACTACTTGTGTGAAACAT520CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTN
OL8520R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8520, mRNA sequence.
EH428215.1:305-324
ACTACTACTACAACTACTTGTGTGAAACAT305CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNARO5GH_T3_002_A05_29NOV2006_047 Brassica napus BNARO5GH Brassica napus cDNA 5', mRNA sequence.
ES907634.1:513-532
ATGTACTATACTAGTACTTGTGTGAAACAT513CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
24RDBNH_UP_167_H08_14DEC2006_050 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
ES921536.1:240-259
ATGTACTATACTAGTACTTGTGTGAAACAT240CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNQA_UP_090_F11_01JUN2005_085 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
ES965093.1:34-53
ATGTACTATACTAGTACTTGTGTGAAACAT34CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNAEN3GH_UP_026_E05_01SEP2006_039 Brassica napus BNAEN3GH Brassica napus cDNA 5', mRNA sequence.
ES994626.1:333-352
ATGTACTATACTAGTACTTGTGTGAAACAT333CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNAEN3GH_UP_196_G06_26NOV2006_036 Brassica napus BNAEN3GH Brassica napus cDNA 5', mRNA sequence.
EV006035.1:208-227
ATGTACTATACTAGTACTTGTGTGAAACAT208CGTGTGTATGTGTTGGTTCCTCTACTTTTGCCTAATGCAGACTCTATTTA
BNSCS2CT_UP_195_B11_27APR2007_093 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV030014.1:552-571
ATGTACTATACTAGTACTTGTGTGAAACAT552CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTCA
BNSCS4CT_UP_142_A04_20MAY2007_032 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV069309.1:291-310
ATGTACTATACTAGTACTTGTGTGAAACAT291CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNSCS4CT_UP_218_G05_23MAY2007_035 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV075226.1:61-80
ATGTACTATACTAGTACTTGTGTGAAACAT61CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
0168855 Brassica napus Flower Brassica napus cDNA, mRNA sequence.
EV133729.1:175-194
ATGTACTATACTAGTACTTGTGTGAAACAT175CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
0137682 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV148671.1:544-563
ATGTACTATACTAGTACTTGTGTGAAACAT544CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
0175245 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV206538.1:561-580
ATGTACTATACTAGTACTTGTGTGAAACAT561CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BR056148 seedling cDNA library KBPS Brassica rapa subsp. pekinensis cDNA clone KBPS-049G07 5', mRNA sequence.
EX071503.1:640-659
ACTACTACTACTACTACTTGTGTGAAACAT640CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BR056230 seedling cDNA library KBPS Brassica rapa subsp. pekinensis cDNA clone KBPS-050H12 5', mRNA sequence.
EX071585.1:640-659
ACTACTACTACTACTACTTGTGTGAAACAT640CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BR060393 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-045E09 5', mRNA sequence.
EX075749.1:508-527
ACTACTACTACTACTACTTGTGTGAAACAT508CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BR060477 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-046F04 5', mRNA sequence.
EX075833.1:690-709
ACTACTACTACTACTACTTGTGTGAAACAT690CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BR085135 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-010C01 5', mRNA sequence.
EX098845.1:408-427
ACTACTACTACTACTACTTGTGTGAAACAT408CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BR087887 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-047D02 5', mRNA sequence.
EX101597.1:735-754
ACTACTACTACTACTACTTGTGTGAAACAT735CGTGTGTATGTGTTGGTTCCTCTTCTTTTACCTAATGCAGACTCTATTTA
BR107348 mature green leaf cDNA library KHLM Brassica rapa subsp. pekinensis cDNA clone KHLM-23H11 5', mRNA sequence.
EX123518.1:659-678
ACTACTACTACTACTACTTGTGTGAAACAT659CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BR124359 primary leaf cDNA library KLPS Brassica rapa subsp. pekinensis cDNA clone KLPS-29E01 5', mRNA sequence.
EX140529.1:150-169
ACTACTACTACTACTACTTGTGTGAAACAT150CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BN24DYSC_UP_018_F02_1FEB2008_006 BN24DYSC Brassica napus cDNA 5', mRNA sequence.
FG572357.1:516-535
ATGTACTATACTAGTACTTGTGTGAAACAT516CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BN24DYSC_UP_082_C11_8FEB2008_091 BN24DYSC Brassica napus cDNA 5', mRNA sequence.
FG577658.1:452-471
ATGTACTATACTAGTACTTGTGTGAAACAT452CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Leptosphaeria maculans 5'-EST from clone RS0ABB8YB07 (RS0ABB8YB07CM1).
FQ060455.1:372-391
ATGTACTATACTAGTACTTGTGTGAAACAT372CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNAOV1GH_T3_111_A04_22SEPT2007_032 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR445722.1:535-554
ATGTACTATACTAGTACTTGTGTGAAACAT535CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
BNAOV1GH_T3_081_E05_17SEPT2007_039 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR448816.1:568-587
ATGTACTATACTAGTACTTGTGTGAAACAT568CGTGTGTATGTGTTGGTTCCTA
0253369 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO920317.1:570-589
TACTAGTCTACTACTACGTGTCTGAAACAT570CGTGTGTATGTGTTGGTTCCTCTTCTTTGCCTAATGCAGACTCTGTTTGT
0263666 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO935453.1:306-325
TACTAGTCTACTACTACTTGTCTGAAACAT306CGTGTGTATGTGTTGGTTCCTCTTCTTTGCCTAATGCAGACTCTGTTTGT
0257831 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO946556.1:645-664
TACTAGTCTACTACTACTTGTCTGAAACAT645CGTGTGTATGTGTTGGTTCCTCTTCTTTGCCTAATGCAGACTCTGTTTGT
Brassica rapa subsp. pekinensis clone KBrB088L15, complete sequence.
FP340620.1:64701-64720
ACTACTACTACTACTACTTGTGTGAAACAT64701CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Brassica oleracea aquaporin PIP1b1 mRNA, complete cds.
AF299050.1:987-1006
ATGTACTATACTAGTACTTGTGTGAAACAT987CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:5846438-5846457
ATGTACTATACTAGTACTTGTGTGAAACAT5846438CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Brassica napus genome assembly, chromosome: C04.
HG994368.1:5577787-5577806
ATGTACTATACTAGTACTTGTGTGAAACAT5577787CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:5475728-5475747
ATGTACTATACTAGTACTTGTGTGAAACAT5475728CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA
B.oleracea mRNA for transmembrane channel protein (mipA).
X95639.1:988-1007
ATGTACTATACTAGTACTTGTGTGAAACAT988CGTGTGTATGTGTTGGTTCCTCTTCTTTTGCCTAATGCAGACTCTATTTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGTGTGTATGTGTTGGTTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGTGTGTATGTGTTGGTTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.863 | 2.853 | search_plus_done; http://172.18.8.135:50400/match?q=CGTGTGTATGTGTTGGTTCC&k=0&no_gap=0&offset=0&limit=50
2.926 | 0.064 | search_minus_done; http://172.18.8.135:50400/match?q=GGAACCAACACATACACACG&k=0&no_gap=0&offset=0&limit=0
2.926 | 0.000 | cgi_end;

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