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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-12 16:20:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sphaeramia orbicularis genome assembly, chromosome: 19.
LR597476.1:35125225-35125242
GCATGGTCCCCATGTCGTCCATAAACACCC35125225CGTTCGCCATTGTTTGTCCCAAGTAGACACAGAGCTGTTGGTCTTTCT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_15041.
FX706717.1:909-926
GCCTGCCGTCCAGATCCAATCGATCGGCTC909CGTTCGCCATTGTTTGTCGGTGAAAGTGTAATCAATGGGTGATGGGAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_20542.
FX769239.1:431-448
GCCTGCCGTCCAGATCCAATCGATCGGCTC431CGTTCGCCATTGTTTGTCGGTGAAAGTGTAATCAATGGGTGATGGGAG
KBrB022F24R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB022F24, genomic survey sequence.
DX026928.1:196-213
GGCTGCCGTCCAGATCCAATCGATCGGCTC196CGTTCGCCATTGTTTGTCGGTGAAAGTGTAATCAATGGGTGATGGGAG
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:2047147-2047164
GCCTGCCGTCCAGATCCAATCGATCGGCTC2047147CGTTCGCCATTGTTTGTCGGTGAAAGTGTAAATCAATGGGAGAGGGAG
Diatraea saccharalis genome assembly, chromosome: 1.
OU893332.1:8696273-8696290
CGAGGCATCTAGCCAATTAATTTTTTTTTT8696273CGTTCGCCATTGTTTGTCTCCCTCTGTCTCACACAGACCTAGAGATTT
Bruchidius siliquastri genome assembly, chromosome: 5.
OX438533.1:33259906-33259923
GATCCTTCACGAGGATTCTGTTTCTTCCTC33259906CGTTCGCCATTGTTTGTCGCATCTCTTCTCGCTGTCGTCGGTCTGGAA
Xestia ashworthii genome assembly, chromosome: 6.
OX465553.1:7489231-7489248
GAGCGACAACTGAAAATTGAGCGCGCGAGG7489231CGTTCGCCATTGTTTGTCATTAATTGAGGGCTTTGCGATGATCTTCGT
Sequence 4731 from Patent EP2519097.
JB352319.1:42-59
CTCCCATCACCCATTGATTACACTTTCACC42GACAAACAATGGCGAACGGAGCCGATCGATTGGATCTGGACGGCAGGC
Sequence 4731 from patent US 9493785.
KH364230.1:42-59
CTCCCATCACCCATTGATTACACTTTCACC42GACAAACAATGGCGAACGGAGCCGATCGATTGGATCTGGACGGCAGGC
Sequence 4731 from Patent EP3056569.
LQ607880.1:42-59
CTCCCATCACCCATTGATTACACTTTCACC42GACAAACAATGGCGAACGGAGCCGATCGATTGGATCTGGACGGCAGGC
Sequence 4731 from patent US 10351873.
MO209452.1:42-59
CTCCCATCACCCATTGATTACACTTTCACC42GACAAACAATGGCGAACGGAGCCGATCGATTGGATCTGGACGGCAGGC
uncultured Cohaesibacter sp. isolate 024a460e-e00e-4b9b-a653-832c004b0c67 genome assembly, chromosome: 48.
OY781833.1:23123-23140
TCACACTTTCCATAGATTGATCAACGATTG23123GACAAACAATGGCGAACGAAGAAACCTCTCTATCTGGGTCATTGATCG
BN25.069B05F020123 BN25 Brassica napus cDNA clone BN25069B05, mRNA sequence.
CD827902.1:13-30
GACACTTTCACC13GACAAACAATGGCGAACGGAGCCGATCGATAGGATCTGGACGGCAGGC
BN40.067I21F011228 BN40 Brassica napus cDNA clone BN40067I21, mRNA sequence.
CD833516.1:98-115
CTCCCATCACCCATTGATTACACTTTCACC98GACAAACAATGGCGAACGGAGCCGATCGATTGGATCTGGACGGCAGGC
EL2031R Brassica embryo library (EL) Brassica napus cDNA clone EL2031 5', mRNA sequence.
CN827103.1:51-68
CTCCCATCACCCATTGATTACACTTTCACC51GACAAACAATGGCGAACGGAGCCGATCGATTGGATCTGGACGGCAGGC
SS2458.txt NaCl treated Chinese cabbage seedling library Brassica rapa subsp. pekinensis cDNA clone SS2458.txt 5', mRNA sequence.
CV546324.1:31-48
CTCCCATCACCCATTGATTACACTTTCACC31GACAAACAATGGCGAACGGAGCCGATCGATTGGATCTGGACGGCAGGC
Brassica oleracea var. viridis mRNA, clone: KALE-093E12, 5' end sequence.
DK491222.1:5-22
GACC5GACAAACAATGGCGAACGGAGCCGATCGATTGGATCTGGACGGCAGGC
63JKCOT5_T3_008_E02_04JAN2005_008 63JKCOT5 Brassica napus cDNA 5', mRNA sequence.
DY017896.1:74-91
CTCCCATCACCCATTGATTACACTTTCACC74GACAAACAATGGCGAACGGAGCCGATCGATTGGATCTGGACGGCAGGC
BNSCS4CT_UP_010_B04_17JAN2005_030 Brassica napus seed coat BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EE468464.1:95-112
CTCCCATCACCCATTGATTACACTTTCACC95GACAAACAATGGCGAACGGAGCCGATCGATTGGATCTGGACGGCAGGC
DHBN8DCT_UP_009_G09_23FEB2005_067 BRASSICA NAPUS SEEDS BNDH8DCT Brassica napus cDNA 5', mRNA sequence.
EE485001.1:91-108
CTCCCATCACCCATTGATTACACTTTCACC91GACAAACAATGGCGAACGGAGCCGATCGATTGGATCTGGACGGCAGGC
36RDBRG_UP_026_A04_18JUN2004_032 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
EE518307.1:66-83
CTCCCATCACCCATTGATTACACTTTCACC66GACAAACAATGGCGAACGGAGCCGATCGATTGGATCTGGACGGCAGGT
BNSCS1CT_UP_121_F08_20APR2007_054 Brassica napus BNSCS1CT Brassica napus cDNA 5', mRNA sequence.
EV018045.1:5-22
GACC5GACAAACAATGGCGAACGGAGCCGATCGATTGGATCTGGACGGCAGGC
BR054594 seedling cDNA library KBPS Brassica rapa subsp. pekinensis cDNA clone KBPS-028A10 5', mRNA sequence.
EX069949.1:33-50
CTCCCATCACCCATTGATTACACTTTCACC33GACAAACAATGGCGAACGGNCCNTTATCGATTGGATCTGGACGGCAGG
BR101881 cotyledon cDNA library KHCT Brassica rapa subsp. pekinensis cDNA clone KHCT-09G02 5', mRNA sequence.
EX118051.1:8-25
TTTCACC8GACAAACAATGGCGAACGGAGCCGATCGATTGGATCTGGACGGCAGGC
h02_03na_2u.s 03na Brassica napus cDNA clone h02_03na_2u 5, mRNA sequence.
GT074959.1:24-41
CTCCCATTGATTACACTTTCACC24GACAAACAATGGCGAACGGAGCCGATCGATTGGATCTGGACGGCAGGC
Brassica rapa subsp. pekinensis clone KBrH017P16, complete sequence.
FP325101.1:28472-28489
CTCCCATCACCCATTGATTACACTTTCACC28472GACAAACAATGGCGAACGGAGCCGATCGATTGGATCTGGACGGCAGGC
Brassica napus genome assembly, chromosome: A09.
HG994363.1:51895051-51895068
CTCCCATCACCCATTGATTACACTTTCACC51895051GACAAACAATGGCGAACGGAGCCGATCGATTGGATCTGGACGGCAGGC
Brassica napus genome assembly, chromosome: C08.
HG994372.1:39692868-39692885
CTCCCTCTCCCATTGATTTACACTTTCACC39692868GACAAACAATGGCGAACGGAGCCGATCGATTGGATCTGGACGGCAGGC
Triticum monococcum genome assembly, chromosome: 1A.
OY737858.1:55386566-55386583
AGTACTTATGGGCGACACATGGCATTCGAC55386566GACAAACAATGGCGAACGGAGGTCACTAATTATCTTCATTTCCATCCC
Xestia c-nigrum genome assembly, chromosome: 12.
OU745255.1:18691468-18691485
ACGAAGATCATCGCAAAGCCCTCAATTAAT18691468GACAAACAATGGCGAACGCCTCGCGCGCCCAATTTTCAGTTGTCGCTC
Eulithis testata genome assembly, chromosome: 20.
OX382213.1:2922459-2922476
AATGGTTGGTCTTGTAATGATTTTTAGAAC2922459GACAAACAATGGCGAACGCGGAAGAAGTAATTGTAGGTAATATCACGA
Patella depressa genome assembly, chromosome: 5.
OX419719.1:2685385-2685402
TCATCTTCGTCTTTACACCAACAAAATGGT2685385GACAAACAATGGCGAACGAGAAAGACGGAACGAGGTATTTACATTTGA
Mystacides longicornis genome assembly, chromosome: 12.
OY756432.1:27423429-27423446
TTGAGAATTCTCACGATTAGGAGTTTCGGA27423429GACAAACAATGGCGAACGTTGTTATCGTAAAGTGATCACACTAAGCCA
Pimpla rufipes genome assembly, chromosome: 2.
OZ010631.1:23535573-23535590
ACCTCCACACGTCTCGGTCCTTGTTTGCAG23535573GACAAACAATGGCGAACGGCCCGAAATATCATAGGGTGGAAAAAGGGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGTTCGCCATTGTTTGTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGTTCGCCATTGTTTGTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.389 | 0.380 | search_plus_done; http://172.18.8.135:50400/match?q=CGTTCGCCATTGTTTGTC&k=0&no_gap=0&offset=0&limit=50
1.392 | 1.003 | search_minus_done; http://172.18.8.135:50400/match?q=GACAAACAATGGCGAACG&k=0&no_gap=0&offset=0&limit=42
1.410 | 0.018 | cgi_end;

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