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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 16:15:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BOHNT39TF BOHN Brassica oleracea genomic clone BOHNT39, genomic survey sequence.
BH441493.1:544-563
TCGGATATCCATTCGGGTTCGGATATTACC544CGTTCGGATTCGGATATCCAATCTCTCCTAACTTTAATACCGTTCGGGTA
BOMHC69TR BO_2_3_KB Brassica oleracea genomic clone BOMHC69, genomic survey sequence.
BH659563.1:215-234
TCGGATATCCATTCGGGTTCGGATATTATC215CGTTCGGATTCGGATATCCAATATCTCCTAATTCAATACCCGTTCGGATA
oei45d07.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ018134.1:305-324
TCGGATATCCATTCGGGATCGGATATTACC305CGTTCGGATTCGGATATCCAATCTCTCCTAACTTAATACCCGTTCGGGTA
lkz67b01.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ089233.1:67-86
TCGGATATCCATTCGGGTTCGGATATTACC67CGTTCGGATTCGGATATCCAATCTCTCCTAACTTAATACCCGTTCGGGTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB046G18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189365.2:56950-56969
TCGGATATCCATTCGGGTTCGGATATTATC56950CGTTCGGATTCGGATATCCAATCTCTCCTAATTCAATACATGTTCGGGTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088F12, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces.
AC241073.1:78687-78706
TCAGATATCCATTCGGGTTCGGATATTACC78687CGTTCGGATTCGGATATCCAATCTCTCCTAATTTAATACCCGTTCAGATA
Brassica rapa subsp. pekinensis clone KBrB065M14, complete sequence.
FP245484.1:17926-17945
TCGGATATCCATTCGGGTTCGGGTATTATC17926CGTTCGGATTCGGATATCCAATCTCTCCTTATTCAATACCCGTTCGGGTA
Brassica rapa subsp. pekinensis clone KBrH098A20, complete sequence.
FP340385.1:15162-15181
TCGGATATCCATTCGGGTTCGGGTATTATC15162CGTTCGGATTCGGATATCCAATCTCTCCTTATTCAATACCCGTTCGGGTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB085G17, complete sequence.
AC189495.2:99698-99717
TCGGATATCCATTCGGGTTCGGGTATTATC99698CGTTCGGATTCGGATATCCAATCTCTCCTTATTCAATACCCGTTCGGGTA
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:45147754-45147773
TCGGATATCCATTCGGGTTCAGATATTACC45147754CGTTCGGATTCGGATATCCAATCTCTCCTAACTTAATACCCGTTCGGGTA
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:54809005-54809024
TCGGATATCTATTCGGGGTCGGATACTACC54809005CGTTCGGATTCGGATATCCAATCTCTTCTAATTCAATACCCGTTCGGATA
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:54820056-54820075
TCGGATATCCATTCGGGTTTGGATATTACC54820056CGTTCGGATTCGGATATCCAATTTCTTCAATTCAATACCCGTTCGGATAT
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:64751011-64751030
TCGGATATCCATTGGGGTTCGGATACTATT64751011CGTTCGGATTCGGATATCCAATTTTTTCTAGCTCAATTTTCGTTCGGGTT
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:4519974-4519993
TCGGATATTCATTCGGGTTTGGATATTACC4519974CGTTCGGATTCGGATATCCAATCTCTCCTAATTCAATACCCGTTCAGATA
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:40106184-40106203
TCGGATATCCATTCGGATTCGGATATTACC40106184CGTTCGGATTCGGATATCCAATCTCTCCTAATTCAATACCCATTCGGATA
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:5633687-5633706
TTGGATATCCATTCGGGTTCAGGTATTACC5633687CGTTCGGATTCGGATATCCAATCTCTCTTAATTCAATACCCGTTCGGATA
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:20454176-20454195
TCGGATATCCATTCGGGTTCGGATATTACC20454176CGTTCGGATTCGGATATCCAATATCTCCTAATTCAATACCCGTTCGGATA
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:23832659-23832678
TCGGATATCCATTCGGGTTCGGATATTACC23832659CGTTCGGATTCGGATATCCAATCTCTCCTAATTTAATACCCGTTCGGATA
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:18583950-18583969
TCGGATATCCATTCGGGTTCGGATATTACC18583950CGTTCGGATTCGGATATCCAATCTCTCCTAACTTAATACCCGTTCGGGTA
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:46682633-46682652
TCGGATATCCATTCGGATTCGGATATTACC46682633CGTTCGGATTCGGATATCCAATCTCTCCTAACTCAATACCCGTTCGGATA
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:10291425-10291444
TCGGATATCCATTCGGGTTCGGATATTACC10291425CGTTCGGATTCGGATATCCAATCTCTCCTAATTCAATATCCTTTCGGATA
Brassica napus genome assembly, chromosome: A04.
HG994358.1:18306442-18306461
TCGGATATCCATTCGGGTTCGGATATTACC18306442CGTTCGGATTCGGATATCCAATCTCTCCTAATTTAATACCCGTTCGGATA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:6005599-6005618
TCGGATATCCATTCGGGTTTGGATATTACC6005599CGTTCGGATTCGGATATCCAATTTCTCCTAACTTAATATCCGTTCGGGTA
Brassica napus genome assembly, chromosome: C04.
HG994368.1:39009877-39009896
TCGGATATCCATTCGGGTTCAGATATTACC39009877CGTTCGGATTCGGATATCCAATCTCTCCTAACTTAATACCCGTTCGGGTA
Brassica napus genome assembly, chromosome: C04.
HG994368.1:48637845-48637864
TCGGATATCTATTCGGGGTCGGATACTACC48637845CGTTCGGATTCGGATATCCAATCTCTTCTAATTCAATACCCGTTCGGATA
Brassica napus genome assembly, chromosome: C04.
HG994368.1:58999630-58999649
TCGGATATCCATTGGGGTTCGGATACTATT58999630CGTTCGGATTCGGATATCCAATTTTTTCTAGCTCAATTTTCGTTCGGGTT
Brassica napus genome assembly, chromosome: C05.
HG994369.1:52106392-52106411
TCGGATATCCATTCGGGTTCGGATATTACC52106392CGTTCGGATTCGGATATCCAATCTCTCCTAATTCAATACCCGTTCGGATA
Brassica napus genome assembly, chromosome: C06.
HG994370.1:33865403-33865422
TCGGATATCCATTCGGATTCGGATATTACC33865403CGTTCGGATTCGGATATCCAATCTCTCCTAATTCAATACCCATTCGGATA
Brassica rapa genome, scaffold: A04.
LR031576.1:17028457-17028476
TCGGATATCCATTCGGGTTCGGATATTACC17028457CGTTCGGATTCGGATATCCAATCTCTCCTAATTTAATACCCGTTCGGATA
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:66685494-66685513
TGGATATCAATTTTGGGTTCGGATATTATC66685494CGTTCGGATTCGGATATCCAATCTCTCCTAATTCAATATCCGTTCGGATA
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:38259955-38259974
TCGGATATCCATTCGGGTTCAGATATTACC38259955CGTTCGGATTCGGATATCCAATCTCTCCTAACTTAATACCCGTTCGGGTA
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:53063240-53063259
TCGGATATCCATTCGGGTTCGGATATTATC53063240CGTTCGGATTCGGATATCCAATATCTCCTAAATCAATACCCGTTCAGGTA
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:32943502-32943521
TCGGGTATCTATTCGAGTTCAGATATTACC32943502CGTTCGGATTCGGATATCCAATCTCTCCTAAATCAATACCCGTTCGGGTA
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:48403908-48403927
TCGGATATCCATTCGGGTTTGGATATTACC48403908CGTTCGGATTCGGATATCCAATCTCTGCTAACTTAATATCCGTTCGGATA
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:14610594-14610613
TTCGGATATTCATTCGGTTCGGATATTATC14610594CGTTCGGATTCGGATATCCAATGTCTCCTAAATCAATATCCGTTTGGATA
Raphanus sativus genome assembly, chromosome: 3.
LR778312.1:7462487-7462506
GATATTACCCGACTGGATTCAGATATTACT7462487CGTTCGGATTCGGATATCCAATATCTCTTAATTTAATACTCGTTCGGATA
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:15798832-15798851
TCGGATATCCATTCGGGTTCGGGTATTACC15798832CGTTCGGATTCGGATATCCAATCTCTCCTAACTTAATATCCGTTCGGGTA
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:17338114-17338133
TCGGATATCCATTCGGGTTCGGGTATTACC17338114CGTTCGGATTCGGATATCCAATCTCTCCTAATTCAATATCCGTTCGGGTA
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:17866905-17866924
TCGGATATCCATTCGGGCTCGGGTATTATC17866905CGTTCGGATTCGGATATCCAATTTCTCCTAAATCAATATCTGAATCCATT
Raphanus sativus genome assembly, chromosome: 9.
LR778318.1:5531290-5531309
TCGGATATCCATTCGGGTTCGGGTATTACC5531290CGTTCGGATTCGGATATCCAATCTCTTCTAACTTAATATCCATTCGGGTA
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:17408106-17408125
TCGGATATCCATTCGGGTTCGGATATTACC17408106CGTTCGGATTCGGATATCCAATCTCTCCTAATTTAATACCCGTTCGGATA
Raphanus sativus genome assembly, chromosome: 9.
OY743206.1:7462487-7462506
GATATTACCCGACTGGATTCAGATATTACT7462487CGTTCGGATTCGGATATCCAATATCTCTTAATTTAATACTCGTTCGGATA
Raphanus sativus genome assembly, chromosome: 1.
OY743207.1:8397536-8397555
TCCAATATCTATTCCGGTTCAGATACTACT8397536CGTTCGGATTCGGATATCCAACTCTCCTAAAATAAATACTCATTTTGATA
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:8956501-8956520
TCGAATATCCATTCGGGTTCGGGTATTACC8956501CGTTCGGATTCGGATATCCAATCTCTCTTAACTTAATACCCGTTCGGATA
Raphanus sativus genome assembly, chromosome: 3.
OY743209.1:1458035-1458054
TCGGATATCCATTCGAGTTCGAATATTATT1458035CGTTCGGATTCGGATATCCAATTTCTCCAAACTTAATACCCCAAATATTT
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:17805174-17805193
CGGATATCCAATCAGGTGTGGATATTTACT17805174CGTTCGGATTCGGATATCCAATCTCTTCTAAATCAATAATCGTTCTGGTA
Apocheima hispidaria genome assembly, chromosome: 7.
OX388151.1:3965369-3965388
TCAATCGGATTAGATTTGGATTGAAAACAC3965369CGTTCGGATTCGGATATCCACATTTCCTAACAAAATCAGGAATAAATCAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB063A04, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC232510.1:94392-94411
AAATCCCGAACATGTATGAATTAGAGAGAT94392TGGATATCCGAATCCGAACGGATAATATCCGAACCGAATGGATATCCGAA
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 148 unordered pieces.
FJ789656.1:1228635-1228654
TATCTGAACGGGTATTAAATTAGGAGAGAT1228635TGGATATCCGAATCCGAACGGGTAATATCCGAACCCGAATGGATATCTGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036M22, complete sequence.
AC189326.1:6529-6548
TACCCGAACGGGTATTGAATAAGGAGAGAT6529TGGATATCCGAATCCGAACGGATAATACCCGAACCCGAATGGATATCCGA
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:15179225-15179244
TATCCGAACGGGTATTAAATTAGGAGAGAT15179225TGGATATCCGAATCCGAACGGGTAATATCCGAACCCGAATGGATATCCGA
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:59730268-59730287
TATTCGAACGGATATTGAATTAGGAGAGAT59730268TGGATATCCGAATCCGAACGGGTAATATTCAAACCCGAATGGATATCCAA
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:14549265-14549284
ACCGAAGTAGAAAAATATCCGAACGGGTAT14549265TGGATATCCGAATCCGAACGGGTAATATCCGAACCCGAATGGATATCCGA
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:1176098-1176117
TACCCGAACATGTATTAAATTAAGAGAGAT1176098TGGATATCCGAATCCGAACGGATAAAATTCGAACCCGGATGGATATCCGA
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:10960436-10960455
TACCCCAACAGTTATTAAGTTAGAAGAAAT10960436TGGATATCCGAATCCGAACGGGTAATATCCAAACCCGAATGGATATCCAA
Verbena officinalis genome assembly, chromosome: 5.
OY292389.1:23962681-23962700
GATAATATCCGATCGGATCGGATCGGATCG23962681TGGATATCCGAATCCGAACGCCCACCCCTAGCCAGAATCACTTTTGGGCG
Verbena officinalis genome assembly, chromosome: 6.
OY292390.1:15954940-15954959
TATCCGATCCGAAATCCGAAATTCGAGTTC15954940TGGATATCCGAATCCGAACGCAATTTGGTGGTAAAAAGTATCCCGATTTT
Raphanus sativus genome assembly, chromosome: 8.
OY743205.1:23362992-23363011
TACCCGAATGGATATTAAGTTAGAAGAGAT23362992TGGATATCCGAATCCGAACGGGTAATACCCGAACCCGAATGGATATCCGA
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:15112477-15112496
AATGGATTCAGATATTGATTTAGGAGAAAT15112477TGGATATCCGAATCCGAACGGATAATACCCGAGCCCGAATGGATATCCGA
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:15641268-15641287
TACCCGAACGGATATTGAATTAGGAGAGAT15641268TGGATATCCGAATCCGAACGGGTAATACCCGAACCCGAATGGATATCCGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGTTCGGATTCGGATATCCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGTTCGGATTCGGATATCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.207 | 0.198 | search_plus_done; http://172.18.8.135:50400/match?q=CGTTCGGATTCGGATATCCA&k=0&no_gap=0&offset=0&limit=50
0.257 | 0.050 | search_minus_done; http://172.18.8.135:50400/match?q=TGGATATCCGAATCCGAACG&k=0&no_gap=0&offset=0&limit=3
0.266 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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