GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:44:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrH101L08R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH101L08, genomic survey sequence.
DU118149.1:597-616
TCATCACTGGTGTGATTATTCTTAACCTGA597CGTTCTGTGGAATGATTTAGAGCTAACTAATGTTATTATAATGTCTCGTA
BOT01-77C3TF BOT01 Brassica oleracea genomic clone BOT01-77C3, genomic survey sequence.
FI729081.1:669-688
TCATCACTGATGTGATTAATCTTAACCTGA669CGTTCTGTGGAATGATTTAGAGCTAACTGATGTTATTATACTATCTCGTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH017L09, complete sequence.
AC241104.1:30354-30373
TCATCACTGGTGTGATTATTCTTAACCTGA30354CGTTCTGTGGAATGATTTAGAGCTAACTAATGTTATTATAATGTCTCGTA
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:10677746-10677765
TCATCACTGGTGTGATTATTCTTAACCTGA10677746CGTTCTGTGGAATGATTTAGAGCTAACTGATGTTTTTATAATGTCTCGTA
Brassica napus genome assembly, chromosome: A03.
HG994357.1:10603303-10603322
TCATCACTGGTGTGATTATTCTTAACCTGA10603303CGTTCTGTGGAATGATTTAGAGCTAACTAATGTTATTATAATGTCTCGTA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:15125293-15125312
CATTCATCACTGATGTGATTACTCTTAAGA15125293CGTTCTGTGGAATGATTTAGAGCTAACTGATGTTATTATAATGTCTCGTA
Brassica rapa genome, scaffold: A03.
LR031572.1:10455570-10455589
TCATCACTGGTGTGATTATTCTTAACCTGA10455570CGTTCTGTGGAATGATTTAGAGCTAACTGATGTTTTTATAATGTCTCGTA
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:15170382-15170401
TCATCACTGATGTGATTACTCTTAACCTGA15170382CGTTCTGTGGAATGATTTAGAGCTAACTGATGTTATTATAATGTCTCGTA
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:10580118-10580137
TCATCACTGGTGTGATTATTCTTAACCTGA10580118CGTTCTGTGGAATGATTTAGAGCTAACTGATGTTTTTATAATGTCTCGTA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:64155073-64155092
TACGAGACATTATAATAACATCAGTTAGCT64155073CTAAATCATTCCACAGAACGTCTTAAGAGTAATCACATCAGTGATGAATG
Merodon equestris genome assembly, chromosome: 2.
OY284414.1:14864390-14864409
TCTCTTCAAATAGCTCCACATGCACACCAA14864390CTAAATCATTCCACAGAACGAACCTCATCATTTCCCCACATTTTAGTTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CGTTCTGTGGAATGATTTAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CGTTCTGTGGAATGATTTAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.446 | 0.438 | search_plus_done; http://172.18.8.135:50400/match?q=CGTTCTGTGGAATGATTTAG&k=0&no_gap=0&offset=0&limit=50
0.558 | 0.112 | search_minus_done; http://172.18.8.135:50400/match?q=CTAAATCATTCCACAGAACG&k=0&no_gap=0&offset=0&limit=41
0.559 | 0.001 | cgi_end;

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