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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 15:06:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH063_02148m, 5' end sequence.
AB450734.1:20-42
ATCTCCTCTCTCTCACTAT20CTAACGAACAGAAGGGAAAACGAAAAACCGAGACGGTGGTGATCAAAATTCAA
Pyrus pyrifolia mRNA, clone: NFR1_01_09, 5' end sequence, expressed in fruit.
HX745710.1:20-42
ATCTCCTCTCTCTCACTAT20CTAACGAACAGAAGGGAAAACGAAAAACCGAGACGGTGGTGATCAAAATTCAA
Pyrus pyrifolia mRNA, clone: NFR1_01_12, 5' end sequence, expressed in fruit.
HX745713.1:20-42
ATCTCCTCTCTCTCACTAT20CTAACGAACAGAAGGGAAAACGAAAAACCGAGACGGTGGTGATCAAAATTCAA
Pyrus pyrifolia mRNA, clone: NFR1_01_14, 5' end sequence, expressed in fruit.
HX745715.1:20-42
ATCTCCTCTCTCTCACTAT20CTAACGAACAGAAGGGAAAACGAAAAACCGAGACGGTGGTGATCAAAATTCAA
Pyrus pyrifolia mRNA, clone: NFR1_01_27, 5' end sequence, expressed in fruit.
HX745727.1:20-42
ATCTCCTCTCTCTCACTAT20CTAACGAACAGAAGGGAAAACGAAAAACCGAGACGGTGGTGATCAAAATTCAA
Pyrus pyrifolia mRNA, clone: NFR1_01_34, 5' end sequence, expressed in fruit.
HX745733.1:20-42
ATCTCCTCTCTCTCACTAT20CTAACGAACAGAAGGGAAAACGAAAAACCGAGACGGTGGTGATCAAAATTCAA
Pyrus pyrifolia mRNA, clone: NFR1_01_39, 5' end sequence, expressed in fruit.
HX745738.1:20-42
ATCTCCTCTCTCTCACTAT20CTAACGAACAGAAGGGAAAACGAAAAACCGAGACGGTGGTGATCAAAATTCAA
Pyrus pyrifolia mRNA, clone: NFR1_01_48, 5' end sequence, expressed in fruit.
HX745746.1:20-42
ATCTCCTCTCTCTCACTAT20CTAACGAACAGAAGGGAAAACGAAAAACCGAGACGGTGGTGATCAAAATTCAA
Pyrus pyrifolia mRNA, clone: NFR1_06_06, 5' end sequence, expressed in fruit.
HX746146.1:20-42
ATCTCCTCTCTCTCACTAT20CTAACGAACAGAAGGGAAAACGAAAAACCGAGACGGTGGTGATCAAAATTCAA
TSA: Pyrus pyrifolia mRNA, contig: contig_1448.
FX432614.1:20-42
ATCTCCTCTCTCTCACTAT20CTAACGAACAGAAGGGAAAACGAAAAACCGAGACGGTGGTGATCAAAATTCAA
TSA: Pyrus x bretschneideri Unigene30248_XinShao mRNA sequence.
JR623303.1:92-114
CACCAGTCACAATCTCCTCTCTCTCACTAT92CTAACGAACAGAAGGGAAAACGAAAAACCGAGACGGTGGTGATCAAAATTCAA
Pyrus communis genome assembly, chromosome: 17.
OY757084.1:6259169-6259191
TTGAATTTTGATCACCACCGTCTCGGTTTT6259169TCGTTTTCCCTTCTGTTCGTTAGATAGTGAGAGAGAGGAGAATGTGACTGGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTAACGAACAGAAGGGAAAACGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTAACGAACAGAAGGGAAAACGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.793 | 0.785 | search_plus_done; http://172.18.8.135:50400/match?q=CTAACGAACAGAAGGGAAAACGA&k=0&no_gap=0&offset=0&limit=50
0.816 | 0.023 | search_minus_done; http://172.18.8.135:50400/match?q=TCGTTTTCCCTTCTGTTCGTTAG&k=0&no_gap=0&offset=0&limit=39
0.817 | 0.001 | cgi_end;

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