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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-12 07:41:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:40055558-40055577
TGATGAACATTTGATTCATTTTTTTTATTC40055558CTAAGCACTTGATCGTCCATTTTGGGATATTCTTTGAGTTGATGAAAACA
Brassica napus genome assembly, chromosome: C02.
HG994366.1:27135056-27135075
TGATGAACATTTGATTCATTTTTTTTATTC27135056CTAAGCACTTGATCGTCCATTTTGGGATATTCTTTGAGTTGATGAAAACA
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:14155175-14155194
TTCATCAACTCAAATAATATCCCTCCCAAA14155175ATGGACGATCAAGTGCTTAGGAATAAAAAAAATAATCAAATGTTTCATCA
Brassica napus genome assembly, chromosome: A02.
HG994356.1:13969199-13969218
TTCATCAACTCAAATAATATCCCTCCCAAA13969199ATGGACGATCAAGTGCTTAGGAATAAAAAAAATAATCAAATGTTTCATCA
Brassica rapa genome, scaffold: A02.
LR031573.1:13679451-13679470
TTCATCAACTCAAATAATATCCCTCCCAAA13679451ATGGACGATCAAGTGCTTAGGAATAAAAAAAATAATCAAATGTTTCATCA
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:28038872-28038891
TGTTTTCATCAACTCAAAGAATATCCCAAA28038872ATGGACGATCAAGTGCTTAGGAATAAAAAAAATGAATCAAATGTTCATCA
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:13753120-13753139
TTCATCAACTCAAATAATATCCCTCCCAAA13753120ATGGACGATCAAGTGCTTAGGAATAAAAAAAATAATCAAATGTTTCATCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTAAGCACTTGATCGTCCAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTAAGCACTTGATCGTCCAT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.120 | 0.111 | search_plus_done; http://172.18.8.135:50400/match?q=CTAAGCACTTGATCGTCCAT&k=0&no_gap=0&offset=0&limit=50
0.176 | 0.056 | search_minus_done; http://172.18.8.135:50400/match?q=ATGGACGATCAAGTGCTTAG&k=0&no_gap=0&offset=0&limit=48
0.180 | 0.004 | cgi_end;

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