GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 04:40:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_36546.
FX703051.1:816-835
CTTCGCAACCAAATATGATGTCGTTGAAGC816CTAAGCTCTTCGCATAGCTAACACTACTCACTGCCATCTGAATGACTTCT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:21771081-21771100
CTTCGCAACCAAATATGATGTCGTTGAAGC21771081CTAAGCTCTTCGCATAGCTAACACTACTCACTGCCATCTGAATGACTTCT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:21757340-21757359
CTTCGCAACCAAATATGATGTCGTTGAAGC21757340CTAAGCTCTTCGCATAGCTAACACTACTCACTGCCATCTGAATGACTTCT
Brassica rapa genome, scaffold: A03.
LR031572.1:21583950-21583969
CTTCGCAACCAAATATGATGTCGTTGAAGC21583950CTAAGCTCTTCGCATAGCTAACACTACTCACTGCCATCTGAATGACTTCT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:21712009-21712028
CTTCGCAACCAAATATGATGTCGTTGAAGC21712009CTAAGCTCTTCGCATAGCTAACACTACTCACTGCCATCTGAATGACTTCT
Sequence 195580 from Patent EP2090662.
HB846366.1:610-629
AGAAGTCATTCAGATGGCAGTGAGTAGTGT610TAGCTATGCGAAGAGCTTAGGCTTCAACGACATCATATTTGGTTGCGAAG
Sequence 195585 from Patent EP2090662.
HB846371.1:591-610
AGAAGTCATTCAGATGGCAGTGAGTAGTGT591TAGCTATGCGAAGAGCTTAGGCTTCAACGACATCATATTTGGTTGCGAAG
BR043724 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-053E10 5', mRNA sequence.
EX059080.1:527-546
AGAAGTCATTCAGATGGCAGTGAGTAGTGT527TAGCTATGCGAAGAGCTTAGGCTTCAACGACATCATATTTGGTTGCGAAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_39450.
FX738356.1:623-642
AGAAGTCATTCAGATGGCAGTGAGTAGTGT623TAGCTATGCGAAGAGCTTAGGCTTCAACGACATCATATTTGGTTGCGAAG
Brassica rapa subsp. pekinensis methylthioalkylmalate synthase (MAM1-1) mRNA, partial cds.
FJ376038.1:608-627
AGAAGTCATTCAGATGGCAGTGAGTAGTGT608TAGCTATGCGAAGAGCTTAGGCTTCAACGACATCATATTTGGTTGCGAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTAAGCTCTTCGCATAGCTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTAAGCTCTTCGCATAGCTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.113 | 0.104 | search_plus_done; http://172.18.8.135:50400/match?q=CTAAGCTCTTCGCATAGCTA&k=0&no_gap=0&offset=0&limit=50
0.236 | 0.123 | search_minus_done; http://172.18.8.135:50400/match?q=TAGCTATGCGAAGAGCTTAG&k=0&no_gap=0&offset=0&limit=45
0.240 | 0.004 | cgi_end;

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