GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:59:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Peromyscus eremicus genome assembly, chromosome: 3.
OX460396.1:29815502-29815521
TAAGGGTTATGAAGATAGAAAAGGATTAGC29815502CTAAGGAAGAGTAGAGAGCACAATTTGTTCAGAGGGAATTGGGTTTGATT
Peromyscus eremicus genome assembly, chromosome: 3.
OX460468.1:30373621-30373640
TAAGGGTTATGAAGATAGAAAAGGATTAGC30373621CTAAGGAAGAGTAGAGAGCACAATTTGTTCAGAGGGAATTGGGTTTGATT
Citrus reshni microsatellite DNA, locus mCrCIR03F05.
FR692364.1:67-86
CTCAAGGACATAACAAAAAATTAGAAATTT67CTAAGGAAGAGTAGAGAGCACTGTAACAAACAACATGATAAACACTGTGT
Citrus reshni microsatellite DNA, locus mCrCIR04A11.
FR692366.1:67-86
CTCAAGGACATAACAAAAAATTAGAAATTT67CTAAGGAAGAGTAGAGAGCACTGTAACAAACAACATGATAAACACTGTGT
Arvicola amphibius genome assembly, chromosome: 12.
LR862392.2:17530996-17531015
TCTTTCTCCCATGTACTCACCTCTATTTTG17530996TGCTCTCTACTCTTCCTTAGAAAGTGCTATATAGCAGTAAATGCCATGTT
Chionomys nivalis genome assembly, chromosome: 5.
OX465453.1:17641823-17641842
TCCTTCTCCTCTATACCCACCTCTATTTTG17641823TGCTCTCTACTCTTCCTTAGAAAGTGCTATATAGCAGTAAATGCCTTGTT
QM0AAA7AH09FM1 CCL1 Citrus clementina genomic clone CCL005O17, genomic survey sequence.
ET072636.1:440-459
ACACAGTGTTTATCATGTTGTTTGTTACAG440TGCTCTCTACTCTTCCTTAGAAATTTCTAATTTTTTGTTATGTCCTTGAG
Citrus sinensis genome assembly, chromosome: 8.
OY754325.1:1695128-1695147
ACACAGTGTTTATCATGTTGTTTGTTACAG1695128TGCTCTCTACTCTTCCTTAGAAATTTCTAATTTTTTGTTATGTCCTTGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTAAGGAAGAGTAGAGAGCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTAAGGAAGAGTAGAGAGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.106 | 0.097 | search_plus_done; http://172.18.8.135:50400/match?q=CTAAGGAAGAGTAGAGAGCA&k=0&no_gap=0&offset=0&limit=50
0.150 | 0.045 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTCTCTACTCTTCCTTAG&k=0&no_gap=0&offset=0&limit=46
0.153 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).