GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 04:53:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum MGMT_Contig39417 mRNA sequence.
JW089661.1:317-338
AAGTGGTTCCACATCTACATTTGAACCCGA317CTAATCCCACCTTCTTTCTACAAACCGAACACCTATTCAATTGAACATGTGT
TSA: Capsicum annuum EJ_MegaContig_438, mRNA sequence.
JW128718.1:307-328
AAGTGGTTCCACATCTACATTTGAACCCGA307CTAATCCCACCTTCTTTCTACAAACCGAACACCTATTCAATTGAACATGTGT
Capsicum annuum Takanotsume DNA, chromosome 10, sequence.
AP026705.1:226732273-226732294
AAGTGGTTCCACATCTACATTTGAACCCGA226732273CTAATCCCACCTTCTTTCTACAAACCGAACACCTATTCAATTGAACATGTGT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 10.
CP124722.1:231530393-231530414
AAGTGGTTCCACATCTACATTTGAACCCGA231530393CTAATCCCACCTTCTTTCTACAAACCGAACACCTATTCAATTGAACATGTGT
KS17060G07 KS17 Capsicum annuum cDNA, mRNA sequence.
GD081161.1:518-539
ACACATGTTCAATTGAATAGGTGTTCGGTT518TGTAGAAAGAAGGTGGGATTAGTCGGGTTCAAATGTAGATGTGGAACCACTT
KS20064C01 KS20 Capsicum annuum cDNA, mRNA sequence.
GD099184.1:576-597
ACACATGTTCAATTGAATAGGTGTTCGGTT576TGTAGAAAGAAGGTGGGATTAGTCGGGTTCAAATGTAGATGTGGAACCACTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTAATCCCACCTTCTTTCTACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTAATCCCACCTTCTTTCTACA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.150 | 0.142 | search_plus_done; http://172.18.8.135:50400/match?q=CTAATCCCACCTTCTTTCTACA&k=0&no_gap=0&offset=0&limit=50
0.340 | 0.190 | search_minus_done; http://172.18.8.135:50400/match?q=TGTAGAAAGAAGGTGGGATTAG&k=0&no_gap=0&offset=0&limit=46
0.342 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).